Basic Information

Insect: Chymomyza amoena
Gene Symbol: -
Assembly: GCA_037043745.1
Location: JBAMAX010001410.1:96227-99903[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.2 3.9e+02 2.3 3.3 3 20 349 366 347 368 0.91

2 17 1.5 1.4e+02 3.7 0.3 1 23 377 402 377 402 0.94

3 17 0.047 4.4 8.4 3.8 2 23 413 434 413 434 0.93

4 17 0.0017 0.16 12.9 0.3 3 23 504 524 502 524 0.96

5 17 5.8e-06 0.00054 20.7 0.7 1 23 530 553 530 553 0.98

6 17 1.9e-05 0.0018 19.1 0.9 2 23 558 579 557 579 0.97

7 17 2.6 2.4e+02 2.9 0.2 1 20 587 606 587 608 0.79

8 17 0.00095 0.089 13.7 0.2 1 22 628 649 628 652 0.90

9 17 5.9 5.5e+02 1.8 4.0 3 21 659 677 659 678 0.89

10 17 0.0043 0.4 11.7 0.7 1 23 697 722 697 722 0.96

11 17 0.0048 0.45 11.5 1.9 1 23 747 770 747 770 0.95

12 17 0.00058 0.054 14.4 0.4 2 23 776 798 775 798 0.93

13 17 0.004 0.37 11.8 0.2 2 23 802 824 801 824 0.95

14 17 0.00033 0.031 15.2 4.6 1 23 830 852 830 852 0.98

15 17 0.022 2 9.5 0.3 3 23 858 879 856 879 0.96

16 17 4.4e-05 0.0041 17.9 1.3 1 23 885 908 885 908 0.97

17 17 0.12 11 7.2 2.5 4 23 915 940 912 940 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.2	3.9e+02	2.3	3.3	3	20	349	366	347	368	0.91
2	17	1.5	1.4e+02	3.7	0.3	1	23	377	402	377	402	0.94
3	17	0.047	4.4	8.4	3.8	2	23	413	434	413	434	0.93
4	17	0.0017	0.16	12.9	0.3	3	23	504	524	502	524	0.96
5	17	5.8e-06	0.00054	20.7	0.7	1	23	530	553	530	553	0.98
6	17	1.9e-05	0.0018	19.1	0.9	2	23	558	579	557	579	0.97
7	17	2.6	2.4e+02	2.9	0.2	1	20	587	606	587	608	0.79
8	17	0.00095	0.089	13.7	0.2	1	22	628	649	628	652	0.90
9	17	5.9	5.5e+02	1.8	4.0	3	21	659	677	659	678	0.89
10	17	0.0043	0.4	11.7	0.7	1	23	697	722	697	722	0.96
11	17	0.0048	0.45	11.5	1.9	1	23	747	770	747	770	0.95
12	17	0.00058	0.054	14.4	0.4	2	23	776	798	775	798	0.93
13	17	0.004	0.37	11.8	0.2	2	23	802	824	801	824	0.95
14	17	0.00033	0.031	15.2	4.6	1	23	830	852	830	852	0.98
15	17	0.022	2	9.5	0.3	3	23	858	879	856	879	0.96
16	17	4.4e-05	0.0041	17.9	1.3	1	23	885	908	885	908	0.97
17	17	0.12	11	7.2	2.5	4	23	915	940	912	940	0.83

Sequence Information

Coding Sequence: atgtcGGAAAACACTGAAGCAAGTCCAAGCTGCCTGCATTGCAGcacaaacaaaccaaatttACATTATCAGGCTATATTTGATGAAGTGGGCACACAAATCGGCTTGGCCGATTTGATGTCCAAGTTTTACAAGATTAATGTAACATCCAAGGAAGGTGAAGCACAGTTGTTGTGTGAGGATTGTGTAAGCCACCTAATACAACTGTACGACATTGATGAGCTTGAAAAACAACGCAAGGCGGCCAAAACTAAGTCGCCGGCTGCTCAGGCCGCTAGAAGTGAAACTAAACAGCAGCAAAGCAAGCTAGAAGCAGCACTTAAGTCGCCAACTAAAGCCGTGCCTGTTGCGACCATCACAGTTGAAACCTCCCCAGCAAAGGAGCGTGTAACACGTGCAAGTAGTTCTGCGCGACTTGCTGATAAATCGGTGCCTGCAAAGATTACCGCCAAGCTGGAAAAACCCTCTAAGGCTATTGAGTCTATAGTGACTCTTGCAGAGGCTGAAAAACCCAAAGTAAAGAAACTGCTGTTGCCCAGGCAGACGACTATTACAAAGGTGGCAACAAAGAGGAAAAGTACAGAACCTAGCAAAGTGACACCAAAGAAAACGCAGCCTGAAACTAGCAGCACACAGGATGCCATTACGGTTTTGATGCAAAACATATTAGATGAGGATGGCGATGGTACAGCAATTAATGCTGAGGTTATCTCTgaacaaaaatctttaaacaaaacatttctGGGGAATGACGAAACCTACTATAATATTGAAAAGCTGGAAATTGATATTTCAGAAGAGCTGGAAGGCGAATTTGACAGCATTGATTCTGATGAAGCCAATTTGGATGCATACAAAATAGATATTGTGGGTGCAGTGCCTGTTAAAAAATCCGACAGCATCAACAGCGAAGATTCAGCAAACGTAGAACCCTTTGTATTTTTGCCCATTAAAGAGAAGGACGATGTAGGCGACTTGTACGAGTACTTGGAGACAGCCGTAAAGACTGCTTTTGAGACCTTAACTTTTGATTGGGAAACTGCTTGTCAGCATTGCACATTCAAGTGCTCGAATTTTCAAAGCCTGTTAACGCATGCTTTAAAGTGTAAAAGGGCAGCCATCGGAGTTTTTAAATGTCCCATAAATAACTGCACTCAACAGCTCAAGGGACGCAAAAAGTTGGCCATGCACTTGGTAGTCCAACATGCTGTGGATCATAACGTTCCTATATATGGCAGCTGTCCGGAATGTCACATGACCTTTTCGAACATAATGACTTACAACAAACATTCTTGCGctcatattttcaaaaagaaacGCGGCGCAATCTTGCATTGCCAGCTATGTGCCATTGAATTTCCCTCTTGGAAACGCTATATTTTTCATACACAATTTCATTTCGAAAAGCATCGTCCTAAAGCTTGCTTTATATGCAATTATGTTGAGCATGATCTGGACAAACTGTTTCATCATTTAAATTACGCTCACGAGCCTAGTGGCACCTTATTCTGTACCATttgcGATCGCATGTTTCGCGATCCGCAAGTCTTCGAAGAGCACAAAGCTACCCATACAGTTTCCGGCACTTTTACCTGCAATGAATGCGGTATTACTTTTGAAACACGCGGTCGCTTAAGTAGCCATATGCGTTCCCAACACGGCGCTTTGATATACTGTGAGCTCTGCTCAAAAGAGTTTTCCACAGAAACTACTTTCAATATTCATATGAGAACACATTTGATCATACAACGCGAACTTTATGTGTGCACCAATTGTAATAAGTTGAGCGATAGCCGCGAGAGAATACAGGAACATGTTAAAAGCGAAGAGGTTGGTTCTTGTTATGGCGTTGAAGTTATAAAAGAAGTGCTACGAGATGCTTATATTTGCGAATATTGTTCTGCttactttaaaacaaaagagGCCTTGCGTGTGCATCGCGAGTCGGGCATACACAAGGATGGTCTCTTCTGGTGTGAGCCCtgttttaagcattttacccATGTCAAGCTGTATCGTCACCAtttaagacaacaacaacagttgcgCACGGATACGGCGCATAGAAAAATGGAAATGTGTATTTACTATATGTGTGATTATGAGAACTGTGAGGAATCATATGTTAATTGGAACTCACTGTATACCCATAAGCGTCGCACGCACGATTTAATGAAATCCATTGAGGCATCACCTGcagcaaatacaacaaaagtcgAAGCAAAGGATAAGGCTCAATTTGTATGTCAATTTTGCAAAAAGGAATGCACAACCAAGATGTCACTAGCCATTCATGTTGCGCGCAGTCATaacaataacaaccTAGTGTGCCCCATTTGCAAGGCATCCTATAGGAATGAAGAACTCTTGCAAAAACATCATGAATACTGGCATGAGCCCACCGAGTGTCCTACTTGTTTAAAAGTGGTAAAAAATCGTCGCAACTATGAAACCCATGTAAATGTGGTGCACTCGAAGAAGAAACGGTACCATTGCAGCATCTGCAAAAAGGGTTTTTATCATAAAAGTGAAATGACAGCGCATGAGCGGttgcATACCGAAGCATACGGCTGTGAGATTTGTAGTTTTAAAACGAGAAACAAGGGATCATTGGATCTTCATATGCTGGTTCAACATTTCAAGAAATATCCATTTGAGTGCAAGATTTGCAAAAAGGGCTTTGGACGCAAGCAGGGCTTGACCTATCACATACAACGTACCCATGGTGAAAACCATCGTTGTCGCGATTTCTATGCAAATGGctgtaacaaaatatttggttcAATGACACATTTGAGCATGCATGTGCGCAAAGTTCATAAGAGCACCATACAGCTGGAGGAGCTGGATGATGAAAGCAACAATGAGGTTTCGGATGCAAAACGTCGTTGCTTTAAAATTGATGATATGCGTATAGAATTTATTGGCATAGATGATGATGAGATTGAAAATGATGATGAGAATTATGAAGCAATCGACGATGATAACGATGGAGAAAGTGACTCTAATGTTGTAACGCAAGTTATCGAAGTTATGGATAACGATGAGTAA
Protein Sequence: MSENTEASPSCLHCSTNKPNLHYQAIFDEVGTQIGLADLMSKFYKINVTSKEGEAQLLCEDCVSHLIQLYDIDELEKQRKAAKTKSPAAQAARSETKQQQSKLEAALKSPTKAVPVATITVETSPAKERVTRASSSARLADKSVPAKITAKLEKPSKAIESIVTLAEAEKPKVKKLLLPRQTTITKVATKRKSTEPSKVTPKKTQPETSSTQDAITVLMQNILDEDGDGTAINAEVISEQKSLNKTFLGNDETYYNIEKLEIDISEELEGEFDSIDSDEANLDAYKIDIVGAVPVKKSDSINSEDSANVEPFVFLPIKEKDDVGDLYEYLETAVKTAFETLTFDWETACQHCTFKCSNFQSLLTHALKCKRAAIGVFKCPINNCTQQLKGRKKLAMHLVVQHAVDHNVPIYGSCPECHMTFSNIMTYNKHSCAHIFKKKRGAILHCQLCAIEFPSWKRYIFHTQFHFEKHRPKACFICNYVEHDLDKLFHHLNYAHEPSGTLFCTICDRMFRDPQVFEEHKATHTVSGTFTCNECGITFETRGRLSSHMRSQHGALIYCELCSKEFSTETTFNIHMRTHLIIQRELYVCTNCNKLSDSRERIQEHVKSEEVGSCYGVEVIKEVLRDAYICEYCSAYFKTKEALRVHRESGIHKDGLFWCEPCFKHFTHVKLYRHHLRQQQQLRTDTAHRKMEMCIYYMCDYENCEESYVNWNSLYTHKRRTHDLMKSIEASPAANTTKVEAKDKAQFVCQFCKKECTTKMSLAIHVARSHNNNNLVCPICKASYRNEELLQKHHEYWHEPTECPTCLKVVKNRRNYETHVNVVHSKKKRYHCSICKKGFYHKSEMTAHERLHTEAYGCEICSFKTRNKGSLDLHMLVQHFKKYPFECKICKKGFGRKQGLTYHIQRTHGENHRCRDFYANGCNKIFGSMTHLSMHVRKVHKSTIQLEELDDESNNEVSDAKRRCFKIDDMRIEFIGIDDDEIENDDENYEAIDDDNDGESDSNVVTQVIEVMDNDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337788;
90% Identity: iTF_00337788;
80% Identity: -