Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: -
Assembly: GCA_949987675.1
Location: OX465089.1:79641320-79644992[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4 4.2e+02 2.3 3.3 3 20 348 365 346 367 0.91

2 18 0.38 40 5.5 0.2 1 23 376 401 376 401 0.94

3 18 0.064 6.7 7.9 2.0 2 23 412 433 412 433 0.93

4 18 2.7 2.9e+02 2.8 0.5 3 23 474 495 473 495 0.93

5 18 0.0017 0.17 12.9 0.3 3 23 503 523 501 523 0.96

6 18 4.8e-06 0.0005 20.9 0.4 1 23 529 552 529 552 0.98

7 18 1.8e-05 0.0019 19.1 0.9 2 23 557 578 556 578 0.97

8 18 5.9 6.1e+02 1.7 0.2 1 9 586 594 586 606 0.76

9 18 0.00058 0.06 14.3 0.2 1 22 627 648 627 651 0.90

10 18 5.6 5.9e+02 1.8 4.0 3 21 658 676 658 677 0.89

11 18 0.0012 0.12 13.4 0.7 1 23 696 721 696 721 0.96

12 18 0.069 7.2 7.8 1.9 1 23 746 769 746 769 0.95

13 18 0.0017 0.17 12.9 0.5 2 23 775 797 774 797 0.93

14 18 0.0038 0.4 11.8 0.2 2 23 801 823 800 823 0.95

15 18 0.00056 0.058 14.4 4.8 1 23 829 851 829 851 0.97

16 18 0.0049 0.51 11.4 0.2 3 23 857 878 856 878 0.97

17 18 3.9e-05 0.0041 18.0 1.6 1 23 884 907 884 907 0.97

18 18 0.2 21 6.4 2.9 4 23 914 939 911 939 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4	4.2e+02	2.3	3.3	3	20	348	365	346	367	0.91
2	18	0.38	40	5.5	0.2	1	23	376	401	376	401	0.94
3	18	0.064	6.7	7.9	2.0	2	23	412	433	412	433	0.93
4	18	2.7	2.9e+02	2.8	0.5	3	23	474	495	473	495	0.93
5	18	0.0017	0.17	12.9	0.3	3	23	503	523	501	523	0.96
6	18	4.8e-06	0.0005	20.9	0.4	1	23	529	552	529	552	0.98
7	18	1.8e-05	0.0019	19.1	0.9	2	23	557	578	556	578	0.97
8	18	5.9	6.1e+02	1.7	0.2	1	9	586	594	586	606	0.76
9	18	0.00058	0.06	14.3	0.2	1	22	627	648	627	651	0.90
10	18	5.6	5.9e+02	1.8	4.0	3	21	658	676	658	677	0.89
11	18	0.0012	0.12	13.4	0.7	1	23	696	721	696	721	0.96
12	18	0.069	7.2	7.8	1.9	1	23	746	769	746	769	0.95
13	18	0.0017	0.17	12.9	0.5	2	23	775	797	774	797	0.93
14	18	0.0038	0.4	11.8	0.2	2	23	801	823	800	823	0.95
15	18	0.00056	0.058	14.4	4.8	1	23	829	851	829	851	0.97
16	18	0.0049	0.51	11.4	0.2	3	23	857	878	856	878	0.97
17	18	3.9e-05	0.0041	18.0	1.6	1	23	884	907	884	907	0.97
18	18	0.2	21	6.4	2.9	4	23	914	939	911	939	0.83

Sequence Information

Coding Sequence: atgtcGGAAAACACTAAAGCGAGTCCAAGCTGCCTGCATTGCAGCACAAACAAGCCAAATTTACATTATCAGGCTATATATGATGATGTGGGCATACAAATCGGCTTGGCCGATTTAATGTCCAAGTTTTACAAGATTAATGTGACCTCCAAGGTTGGTGAAGCGCAGTTACTGTGCGAGGATTGTGTAAGTAGCCTAATACAACTGTACGACATTGATGAGCTTGAAAAACAACGTAATGCTGCCAAAACTAAGCCGCCGGTTGCTCAGGCCGCTAGAAGTGAAACTAAACAGCAGCAAAGCAAGCTAGAGGCAGCTCTTAAGTCGCCAACTAAAGCCGTGCCCACTACGACCGTCGCAGTTGAAGCCTCCCCAGCAAAAGAGCGTGTAACACGTGCAAGTAGTTCTGCGCGAATTGTCGCAAAATCTGTGCCTGCAAAGATTACCGCCAATTTGGAAAAACCCTCTAAGGCTGTTAAGTCCATAGTGACTATTGCAGAGGCTGAAAAACCAAAAGTGAAGAAGCTGGTGTTGCCTAGGCAGACGACTATTACTAAGGTTGCAACAAAGAGGAAAAGTACAGAGCCAAGCAAAGTGACACCAAATAAAGAGCAGCCTGAAACTAGCAGCTCACAGGATGATATTACGGTTTTGATGCAAAACATATTAGCTGAGGATGGCGAAGGTACAGCAATTAATGCTGAGATAACTGAACAAAAATCTTTACCCAAAACATTTTTGGGCAATGATGAAACCTACTATAATATTGAAAAGCTGGAAATTGATATTTCAGAAGAACTGGAAGGGGAGTTTGAGAGCATTGATTCTGATGAGGCCAATCTGGATGAATTGAAAATAGATATTGTTGGAGCAGTTCCTGTTAAAAAATCCGAAAGCATCAACAGCGAAGATTCAGCAAACGTAGATCCTTTTGTATTTTTGCCCATTAAAGAGAAGGACGATGTAGGCGACTTGTACGACTACTTGGAGACAGCCGTAAAGACTTCTTTTGAGACCTTAACTTTTGATTGGAAAACAGCTTGTCAGCATTGTACGTTCAAGTGCTCGAATTTTCAAAGCCTGTTAACGCATGCTTTAAAGTGTAAAAAAGCATCCAACGGAATTTATAAGTGTCCCATAAATGACTGCACTCAACAGCTTAAGGGGCGCAAAAAGTTGGCCATGCACTTGGTAGTGCAACATGCTGTAGATAATAACGTTCCAATATATGGCAGCTGCCCGGAGTGTCTCATGACCTTTTCGAATTTAATGACTTACAACAAACATTCTTGCGCtcatattttcaaaaagaaaCGCGGCGCAATCTTGCATTGTCAACTATGTGCAGTTGAATTTCCCTCTTGGAAACGCTATCTATTTCATACACAATTTCATTTCGAAAAGCATCGTCCTAAAGCTTGCTTTATATGCAATTATGTTGAGTATGATCTGGACAAACTGTTTCATCATTTAAATTACGCTCACGAGCCCAGTGGCACCTTATTCTGTACCATCTGCGATCGCATGTTTCGCGATCCGCAAGTCTTCGAAGAGCACAAAGCAACACATACTGTTTCTGGCACATATACCTGCAATGAATGCGGTGTTACTTTTGAAACACGCGGTCGCTTAAATGGGCATATGCGTACCCAACACGGCGCTTTGATATACTGTGAACTCTGCTCAAAAGAGTTTTCCACAGaaacaacttttaatattcatatgaGAACACATTTGATTATACAACGCGAACTTTATGTGTGCACTAACTGCAATAAGTTGAGCGATAGCCACGAGAGAATACAGGAACACGTTGAAAACGAAGAAGTTGGTTCCTGTTATGGCGTCGAAGTAATAAAAGAAGTGCTACGTGATGCCTATATCTGCGAATATTGTTCAGCTTACTTTAAAACTAAAGATGCCCTGCGGGTGCATCGCGAGTCGGGTATACACAAGGATGGTCTCTTCTGGTGTGAGCCTTGTTTTAAGCATTTTACCCATGTGAAACTATATCGCCATCATTTAAGACAACAGCAAAAATTGCGCACGGATACGGCGCATAGAAAAATGGAAATGTGTATTTACTATATGTGTGATTATGAGAACTGCGACGAATCATATGTTAATTGGAACTCACTGTATACACATAAGCGTCGCACGCACGATATAATGAAAGCCATTGAGGCATCACCTGCAGAAAATACAACCAAAGTCGAAGAAAAAGATAAGGCCAAATTTATATGTCAATTTTGCAAAAAGGAATGCCAAACCAAGATGTCACTAGCAATTCATGTTGCGCGCAGTCATaacaataACAACCTAGTGTGCCCCTTGTGCAAGGCATCCTATAAGAATGAAGAACTCTTGCAAAAACATCATGAATACTGGCATGAGCCCACCGAGTGTCCTACTTGTTTAAAAGTGGTAAAAAATCGTCGCAACTATGAAACTCATGTAAATGTGGTGCACTCCAAGAAAAAGCGTTACCATTGCAGCATCTGCAAAAAGGGTTTTTATCATAAAAGTGAAATGACAGTGCATGAGCGGttGCATACTGAAGCACACGGCTGTGAGATTTGTAATTTTACAACGAGAAACAAGGCATCCTTGGATCTTCATATGCTGGTTCAACATTTCAAGAAATATCCATTTGAGTGCAAGGTTTGCAAAAAGGGCTTTGGACGCAAGCAGGGCTTGACCTATCATATGCAACGTACCCATGGTGAAAAACATCGTTGTCGCGATTTCTTTGCAAATGGCTGTAGCAAAATATTTGGTTCAATGACCCATTTGAGCACGCATGTGCGCAAGGTTCATAAGAGCACCATACAGCTGGAGGAGCTTGATGATGAAAGCAGCAATGAGGTTCCGGATGCAAAACGTCGTTGCTTTAAAATTGATGATATGCGTATAGAATTTATTGGCATAGATGATGATGAGATTGAAAATGATACTGCGAATTATGAAGTAATCGACGATGATAATGATGGAGAAAGTGACTCTAATGTTGTATCGCAAGTAATCGAAGTTCTGGATAATGATGAGTAA
Protein Sequence: MSENTKASPSCLHCSTNKPNLHYQAIYDDVGIQIGLADLMSKFYKINVTSKVGEAQLLCEDCVSSLIQLYDIDELEKQRNAAKTKPPVAQAARSETKQQQSKLEAALKSPTKAVPTTTVAVEASPAKERVTRASSSARIVAKSVPAKITANLEKPSKAVKSIVTIAEAEKPKVKKLVLPRQTTITKVATKRKSTEPSKVTPNKEQPETSSSQDDITVLMQNILAEDGEGTAINAEITEQKSLPKTFLGNDETYYNIEKLEIDISEELEGEFESIDSDEANLDELKIDIVGAVPVKKSESINSEDSANVDPFVFLPIKEKDDVGDLYDYLETAVKTSFETLTFDWKTACQHCTFKCSNFQSLLTHALKCKKASNGIYKCPINDCTQQLKGRKKLAMHLVVQHAVDNNVPIYGSCPECLMTFSNLMTYNKHSCAHIFKKKRGAILHCQLCAVEFPSWKRYLFHTQFHFEKHRPKACFICNYVEYDLDKLFHHLNYAHEPSGTLFCTICDRMFRDPQVFEEHKATHTVSGTYTCNECGVTFETRGRLNGHMRTQHGALIYCELCSKEFSTETTFNIHMRTHLIIQRELYVCTNCNKLSDSHERIQEHVENEEVGSCYGVEVIKEVLRDAYICEYCSAYFKTKDALRVHRESGIHKDGLFWCEPCFKHFTHVKLYRHHLRQQQKLRTDTAHRKMEMCIYYMCDYENCDESYVNWNSLYTHKRRTHDIMKAIEASPAENTTKVEEKDKAKFICQFCKKECQTKMSLAIHVARSHNNNNLVCPLCKASYKNEELLQKHHEYWHEPTECPTCLKVVKNRRNYETHVNVVHSKKKRYHCSICKKGFYHKSEMTVHERLHTEAHGCEICNFTTRNKASLDLHMLVQHFKKYPFECKVCKKGFGRKQGLTYHMQRTHGEKHRCRDFFANGCSKIFGSMTHLSTHVRKVHKSTIQLEELDDESSNEVPDAKRRCFKIDDMRIEFIGIDDDEIENDTANYEVIDDDNDGESDSNVVSQVIEVLDNDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337788;
90% Identity: iTF_00337788;
80% Identity: -