Basic Information

Insect: Chymomyza caudatula
Gene Symbol: retn
Assembly: GCA_035041775.1
Location: JAWNKW010000142.1:204570-228131[-]

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4e-26 8.4e-23 80.7 0.0 2 89 266 351 265 351 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4e-26	8.4e-23	80.7	0.0	2	89	266	351	265	351	0.96

Sequence Information

Coding Sequence: ATGCGCGACTGCGACTCCGTGGACGGCgagcatcatcatcagcatcagtTGGGCATCAAGGGTACAATAGCCTCACGTTTGAGTCACAACGGCAGCGGCGGAGCACTGGGTTTTGCCAGTGTACGTGCGCACAGTCCGGAACAGGCAACAGATTTGCCACTTAGCCATCATCATCAGTTACCACCAAATCATCCTTTGAATGCCTTGGGCAGCTTTATGGGCATTGGCGGACTACACAGCATTCCAAATCTGCAACACAGTGATGTGCTGGAGAAGCTCAAGATGCAGGTGCGCGACATGAAAGTGGGTCTTATGGAACAGGACTACGCGGTGGCAGCGCATGCTGCAGCTTTTGGCGCCAATATGCTGCCCACCACCATCAGCTCGGCCTTTCCACTGCCACATAATACAgtggctgctgcagcagctgcaaactTTGGCCATGTTGCGCCCAGCTTGGGcacacaaacagcaacaaatggcAGCACGGCTGCCACAAATGGTGGCAGCTACAATGGCGGCAATGCAGCATCAGCTGGTGCAGGCAGCGCagtagctgcagctgcagctggagCCAATGGCACAGGCAGCGCAGGCAGTGCAGCTGGCAATGCTGGCGCACATCCTTTCTCATTTGCATCACCGACAGCGCCAAGCGCCAAAGAAGCTAATTCCGCATCAAATTCATCGACGTCCAGTGAGGCTTCCAATTCATCACAACAAAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTTTACGAAATTAACGATGATCCCAAACGCAAGGAGTTCCTGGATGATTTATTCTCGTTTATGCAAAAGCGTGGCACACCCATCAATCGTCTGCCCATCATGGCCAAATCGGTGCTGGATCTCTATGAGCTATACAATTTGGTAATTGCGCGTGGCGGTCTGGTCGATGTGATCAACAAGAAGCTATGGCAGGAGATCATCAAGGGACTGCATTTGCCCTCCAGCATTACCAGTGCGGCTTTTACGCTGCGCACACAATATATGAAGTATCTCTATCCCTACGAATGCGAGAAGAAGAATCTCAGCACACCAGCCGAGCTGCAAGCGGCCATAGATGGCAATCGCCGTGAAGGACGTCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAAATGCCACTGACACCCATATCACGTCCACCATTGCCGggtggcatgcaacaaatgTCGCCGCTGGCGCTGGTTACACACGCCGCAGCGGCCAATAATCAACAGGCGcaagcagcagccgcagcagctgcggcaCATCGTCGTCTGATGGGCGCGCCAGGCTTTGGTCAAATGCCGAATTTGGTTACACAGGAGTTTGAGAATCGCATGATGGAATATATACAACTGATACAAGCCAAGAAGGATCAGAGCGCAGCAAGCGGCATGTTGggcaatgcagcagcagcagcagcgcatcatcagcagcagcagcagcaacagcagcagcagctgcaacagcaacagcagcagcgtcaaCGCTCGCAGAGTCCGGAGCTGAGCACGCGCGAGGCGCTCAGTGCGCAAGTTTTGTGGCATATGTATCATAATAACAATAGTCCGCCCGGTTCGACGCACACCTCGCCGCAGTTTGGCGCACCAACAGAACAGCAACGCGAAGCTCTAAACCTCTCCGACTCACCACCGAATCTCAACAATATAAAACGTGAACGCGAGCGTGAACCCACGCCAGAGCCTGTGGATCATGAGGATGCGCCACATCAGCCGCCGCCAGCCAAGCGCGCGGGCAATTCCTTAATACCACCGGGTTTTCCTGCCAGCTTTTATCTGAATCCACATAATATGGCTGCTGTGGCAGCCGCAGCGGGCTTTCATCATCAGGCCAATAATAGCCATCATCAGGATGCGGCTTCGGAGGGTGAAGCGGATGATGATTATGCACAGAATGAGCACAATATCACAGGCAATTCTTCCAATTTGCATGATGATAATGAGCCACAACAATTGAATGgacatcatcagcatcatctgCATCATTCGTCGCATCACAACAATCATCTGGATAAATCCGATGACTCGGCCATAGAGAACTCACCCAGCACTTCCACCTCGGTTTCAGGCGGCAATCGTCATAGTTCGCCGGTGTCTACCAAGAAAAAGAATGTCAGCAAGtcgcagagcagcagcagcaaggaGCTGCAGGTGGACAATGGCGGCGTCAGTAACAATAGTACGCTCGATGCGCTTAATCTTTTATCAGGACTGCAGTTTCAAGTGGCACGTAATGGCATCAACGAGCAAGGCGAGCAGCAACTGCGCGTCAATCTGGAGCTTAATGGCATCAAGTACTCGGGCGTGCTGGTGTCCAATGCCAAAGCCATACCCAACGATTCATCTGCTAGCCAAGCAGCTGAGGCAGAGGAGCAGGAGGAGGCACAGCTCAAAACAGCAGCTGTGATTGAAGCCAGCACAGAAACAACGGATGCCAATGCCGTAGCTGATGACGAGCAGTGCGCGATAAAGTGCGAGCTGGACGCAAGTGCCATTGTAAATGGTGCCGGCAGCGGCGCACCTACGCCTGCCTCATTGAGCAAGGATGCTGTGGTCAGTTCGTAG
Protein Sequence: MRDCDSVDGEHHHQHQLGIKGTIASRLSHNGSGGALGFASVRAHSPEQATDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAVAAHAAAFGANMLPTTISSAFPLPHNTVAAAAAANFGHVAPSLGTQTATNGSTAATNGGSYNGGNAASAGAGSAVAAAAAGANGTGSAGSAAGNAGAHPFSFASPTAPSAKEANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGAPGFGQMPNLVTQEFENRMMEYIQLIQAKKDQSAASGMLGNAAAAAAHHQQQQQQQQQQLQQQQQQRQRSQSPELSTREALSAQVLWHMYHNNNSPPGSTHTSPQFGAPTEQQREALNLSDSPPNLNNIKREREREPTPEPVDHEDAPHQPPPAKRAGNSLIPPGFPASFYLNPHNMAAVAAAAGFHHQANNSHHQDAASEGEADDDYAQNEHNITGNSSNLHDDNEPQQLNGHHQHHLHHSSHHNNHLDKSDDSAIENSPSTSTSVSGGNRHSSPVSTKKKNVSKSQSSSSKELQVDNGGVSNNSTLDALNLLSGLQFQVARNGINEQGEQQLRVNLELNGIKYSGVLVSNAKAIPNDSSASQAAEAEEQEEAQLKTAAVIEASTETTDANAVADDEQCAIKCELDASAIVNGAGSGAPTPASLSKDAVVSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00338925; iTF_00338110; iTF_00337295; iTF_00335648;
90% Identity: -
80% Identity: -