Basic Information

Insect: Chymomyza procnemis
Gene Symbol: retn
Assembly: GCA_035046065.1
Location: JAWNOJ010000023.1:27304612-27337056[+]

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 8 1.8e+04 -3.9 0.0 42 64 103 124 96 131 0.60

2 3 3.6e-26 8.2e-23 80.6 0.0 2 89 293 378 292 378 0.96

3 3 8 1.8e+04 -3.8 0.5 7 26 525 543 516 561 0.51

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	8	1.8e+04	-3.9	0.0	42	64	103	124	96	131	0.60
2	3	3.6e-26	8.2e-23	80.6	0.0	2	89	293	378	292	378	0.96
3	3	8	1.8e+04	-3.8	0.5	7	26	525	543	516	561	0.51

Sequence Information

Coding Sequence: ATGGATTGTAGCGGCCgttcaaataatattgaacGTGATTCCGATTTGGGAGACGATTTGTCACACGGCGATCGCACGGATGACGAGATGCGCGATTGCGACTCTGTAGACGgcgatcatcatcatcagcatcagctGGGCATAAAGGGTAGCATAGCCTCCAGATTAAGTCACAACGGTAGCGGTGGAGCATTGGGTTTTGGCAGTGTGCGTGCACACAGTCCGGAGCAGGCAACAGATTTGCCACTAAGCCACCATCATCAGCTACCGCCTAATCATCCTTTAAACGCTTTAGGCAGCTTTATGAGCATAGGCGGACTACACAGCATTCCAAATCTGCAGCATAGTGATGTGCTGGAGAAGCTCAAGATGCAGGTGCGCGATATGAAAGTGGGTCTGATGGAACAGGACTATGCTGTGGCAGCGCATGCTGCAGCCTTTGGTGCGAATATGTTGCCCACGACCATGAGCTCAGCTTTTCCACTGCCACATAATACAGTGgccgctgcagcagccgcTAACTTTGGACATGTTGCACCTGGTTTGAGcgcacaaacagcaacaaatggaGGCAGCAGTGTGGCCACAAATGGTGGCAGCTACAATGGTGGCAGTGCatcagcggcggcagcaggcAATAATACGACCGGAGCCAATGGCGCGGGCGGTGGCAATAATGCAGCTAGCGGCAATGCTGGCGCACATCCTTTCTCATTTGCATCACCCACAGCGCCCAGCGCTAAAGAAGCTAATTCCGCATCCAACTCATCGACGTCTAGTGAGGCTTCCAATTCATCACAACAAAATAATGGCTGGAGTTTTGAAGAGCAGTACAAACAAGTCAGACAGCTTTACGAAATTAATGATGATCCCAAACGCAAGGAGTTTCTCGATGATTTATTCTCGTTTATGCAAAAGCGTGGTACACCCATTAATCGGCTGCCAATTATGGCCAAATCGGTATTGGATCTCTATGAGCTGTACAATCTGGTTATAGCACGTGGCGGATTGGTCGATGTGATCAATAAGAAGCTATGGCAGGAGATTATCAAGGGACTGCATTTGCCCTCCAGCATAACCAGTGCGGCTTTTACGCTGCGCACACAATATATGAAGTATCTCTATCCCTACGAATGTGAGAAGAAAAATCTCAGCACTCCAGCAGAGCTGCAAGCAGCCATCGATGGCAATCGACGTGAAGGACGTCGTTCCAGCTACGGCCAATATGAGGCCATGCACAATCAAATGCCATTGACACCCATATCACGTCCACCAATGCCGggtggcatgcaacaaatgTCGCCATTGGCGCTGGTTACACACGCCGCTGCTGCAAACAATCAGCAGGCACAGGCtcaagcagcagcggcagcagctgctgcacacCGTCGCCTGATGGGTGCACCAGGTTTTGGTCAAATGCCAAATTTGGTTAGCCAAGAATTCGAAAATCGCATGATGGAGTACTTACAGTTGATACAAGCAAAGAAGGATCAGAGTGTAGCAAGTGGCATGATGggaaatgcagcagcagcggcagcgcatcatcagcaacagcagcagcagcagcaacagcagttgcaacaacaacagcagcaacagCGCCAGCGCTCCCAAAGCCCGGAGTTGAGCACGCGCGAGGCGCTTAGCGCTCAGGTCTTGTGGCATATGtatcacaacaacaatagtccGCCCGCATCGACGCACAACTCACCACAGTTTGGCGCAGCCATAGAACAGCAACGCGAAGCACTGAACCTCTCTGACTCACCACCGAATCTCAACAATATAAAACGTGAACGCGAACGTGAACCCACCCCAGAGCTGGCCGAGCATGAGGAGACGCCACATCAGCCGCCGCCAGCGAAACGTGCTACCAATGCCTTAATACCACCGGGTTTTCCTGCCAGCTTTTATTTGAATCCACACAATATGGCTGCTGTGGCCGCTGCAGCGGGCTTTCATCATCAGGCCAACAATagtcaacaacagcaacaggatGCGGCCTCTGAGGGTGAAGCAGAGGATGACTATGCCAATAATGAGCACAATACCACAGGCAATTCTTCCAATATGCATGATGAGAGCGAGCCGCAGCTATTGAACGgacatcatcaccatcatcatcagcatcatcaaaAGCAGCATAATAATCATCACGACAAATCGGATGATTCGGCCATAGAGAACTCACCCAGCACCTCCACCACGGTCTCTGGCGGTAATCGTCATAGTTCGCCTGTGTccacgaaaaaaaagaatgcaaGCAAAGAGCTGCAGCAGCCAGCTTGCGCAGCGTCTAATAGCGCAATAGATGCGCTAAATCTCTTGTCAGGATTGCAATTTCAAGTGGCACGTAATGgCGAGCAACAGCTGCAAGTCAATCTATCGCTTAATGGCGTCAAGTATACGGGCGTGCTTGTGGCCAACGCACAAGCGTTGGACGGCGTGACAGCAGCTGAGgaggagcaacagcagcagcagcaacagcagcacagCAATGAAAGCGCCACGGAAACAGAGACAGCTGAGCAGGAGGAgttggagcagcagcagcagcagcagccagagCATGAGCAGGACGAGCAGCAGTGCCTGGTCAAGTGCGAGCTGGACACAAGTGCCATTGCAAATGGTGCCAGCAGCAATGCGCCCAAGGAAGCTGCTGTGGCCAGTTCGTAG
Protein Sequence: MDCSGRSNNIERDSDLGDDLSHGDRTDDEMRDCDSVDGDHHHQHQLGIKGSIASRLSHNGSGGALGFGSVRAHSPEQATDLPLSHHHQLPPNHPLNALGSFMSIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAVAAHAAAFGANMLPTTMSSAFPLPHNTVAAAAAANFGHVAPGLSAQTATNGGSSVATNGGSYNGGSASAAAAGNNTTGANGAGGGNNAASGNAGAHPFSFASPTAPSAKEANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPMPGGMQQMSPLALVTHAAAANNQQAQAQAAAAAAAAHRRLMGAPGFGQMPNLVSQEFENRMMEYLQLIQAKKDQSVASGMMGNAAAAAAHHQQQQQQQQQQLQQQQQQQRQRSQSPELSTREALSAQVLWHMYHNNNSPPASTHNSPQFGAAIEQQREALNLSDSPPNLNNIKREREREPTPELAEHEETPHQPPPAKRATNALIPPGFPASFYLNPHNMAAVAAAAGFHHQANNSQQQQQDAASEGEAEDDYANNEHNTTGNSSNMHDESEPQLLNGHHHHHHQHHQKQHNNHHDKSDDSAIENSPSTSTTVSGGNRHSSPVSTKKKNASKELQQPACAASNSAIDALNLLSGLQFQVARNGEQQLQVNLSLNGVKYTGVLVANAQALDGVTAAEEEQQQQQQQQHSNESATETETAEQEELEQQQQQQPEHEQDEQQCLVKCELDTSAIANGASSNAPKEAAVASS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00336505;
90% Identity: -
80% Identity: -