Cfus017199.1
Basic Information
- Insect
- Chymomyza fuscimana
- Gene Symbol
- retn
- Assembly
- GCA_949987675.1
- Location
- OX465089.1:95840602-95865467[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-26 1.2e-22 80.6 0.0 2 89 274 359 273 359 0.96 2 2 7.4 2.4e+04 -3.7 0.5 5 27 504 526 499 542 0.58
Sequence Information
- Coding Sequence
- ATGTCACACGGCGATCGCACGGATGACGAGATGCGCGACTGCGACTCAGTAGACGGCGATCATCATCACCAGCATCAGCTGGGCATCAAGGGCAGCATAGCCTCCCGTTTGAGTCACAACGGCAGCGGTGGAGCACTGGGTTTTGGCAGCGTACGCGCACACAGTCCGGAGCAGGCAACAGATTTGCCGCTAAGCCATCATCATCAGTTACCGCCAAATCATCCTTTGAACGCTTTAGGCAGCTTTATGGGCATTGGCGGACTACACAGCATTCCAAATCTGCAGCATAGCGATGTGCTGGAGAAGCTCAAGATGCAGGTGCGCGACATGAAAGTGGGTCTTATGGAACAGGACTATGCTGTGGCAGCGCATGCTGCAGCCTTTGGCGCCAATATGTTGCCCACTACAATAAGCTCGGCTTTTCCGCTGCCGCATAATACAGTAGCTGCGGCAGCAGTCGCCAACTTTGGCCATGTAGCGCCTGGTTTGGGCGCGCAAGCAGCAACAAATGGCAGCACAGCTGCCACAAATGGTGGCAGCTACAATGGCGGCagtgcagcagctgcagcagttgGAGCATGCAATGCCGCAGCCGGAGCCAATGGCACGGGCAGTGGCAACAGTGCAGCTGGCAATGCTGGCGCACATCCCTTCTCATTTGCATCGCCCACAGCGCCCAGCGCCAAAGAAGCTAATTCCGCATCAAATTCATCGACGTCCAGTGAGGCTTCCAATTCATCACAACAAAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTTAGACAGCTTTACGAAATTAATGATGATCCCAAACGCAAGGAGTTTCTCGATGATTTATTCTCGTTTATGCAAAAGCGTGGCACACCCATTAATCGGCTGCCAATTATGGCCAAATCGGTATTGGATCTCTATGAGCTATACAATTTGGTCATAGCACGTGGCGGACTGGTCGATGTGATCAACAAGAAGCTATGGCAGGAGATTATCAAGGGACTGCATTTGCCCTCCAGCATAACCAGTGCGGCTTTTACGCTGCGCACACAATATATGAAGTATCTCTATCCCTACGAATGTGAGAAGAAAAATCTCAGCACTCCAGCCGAGCTGCAAGCGGCCATAGATGGCAATCGGCGTGAAGGACGCCGTTCCAGCTACGGTCAATACGAGGCCATGCACAATCAAATGCCACTGACACCCATATCACGTCCACCAATGCCGGGTGGCATGCAACAAATGTCGCCGTTGGCGCTGGTTACACACGCCGCTGCGGCAAACAATCAGCAGGCACAGGCTcaggcagcagcggcagcagctgctgcacaTCGTCGTCTGATGGGTGCACCAGGTTTTGgtcaaatgccgaatttggttacccAAGAATTTGAGAATCGCATGATGGAGTATATACAACTAATACAAGCCAAGAAGGATCAGAGTGCAGCAAGTGGCATGTTGGGgaatgcagcagcagcggcagcgcatcatcagcagcagcaacaacaacagcaacagcagctgcaacagcaacaacaacaacagCAGCGTCAACGCTCTCAAAGTCCAGAACTGAGCACGCGGGAGGCGCTTAGCGCTCAGGTTTTATGGCATATgtatcacaacaacaacagtccgCCCGCTTCAACGCACACCTCACCACAGTTTGGCACTGCCACAGAACAGCAACGCGAAGCTCTCAACCTCTCCGACTCACCACCGAATCTCAACAATATAAAACGTGAACGCGAGCGTGAACCCACACCAGAGCTTGTGGAGCACGAGGAGGCGCCACATCAGCCGCCTCCAGCCAAACGTGCGACCAATGCCTTAATACCACCGGGTTTTCCTGCCAGCTTTTATTTGAATCCACATAATATGGCTGCTGTAGCCGCAGCCGCGAGCTTTCATCATCAGGCCAACAATAGTCAACATCAACAGGATGTAGCTTCAGAGGGTGAGCCAGAGGATGACTATGCCAATAATGAGCACAATACCACAGGCAATTCTTCCAATATGCATGATGATAATGAGCCGCAGCTATTGAATGGacatcatcctcatcatcaaCAGCTGCATCATTCGCAGCACAATAATCATCTGGATAAATCGGATGACTCGGCCATAGAGAACTCACCTAGCACCTCCACCTCGGTTTCGGGCGGCAATCGTCATAGTTCGCCTGTGTCTACTAAGAAAAAGAATGTGAGCAAGGCGCAGAGCAGCAACAAGGAGCTGCAGCAGCCACAGAGCGCGGCGCATAGTAGCGCCTTAGATGCGCTGAATCTCTTGTCAGGATTGCAATTTCAAGTGGCACGTAATGGCACCAGCGAGCAAGGCGAGCAGCAACTGCAAGTCAATCTATCGCTTAATGGCATCAAGTACACGGGCGTGCTGGTGGCCAGTGCCAAGACATTGGACAGCGTGACTGCAGCTGAGCAGGATGAGCAGCAGGAAACAGCAGCTGTAAATGAAAGCAGCACGGAAACAGAGCGTGccaatgcagcagcagcagcagcagctgagcAGCAGGAGGATGAGGAgaacgagcagcagcagcaggagtgCCTGGTCAAGTGCGAGCTGGACACAAGTGCCATTGTAAATGGTGCCAGCAGCAATGCTGTGGCTGCGCCCGCCTCAGCATTGAGCAAGGAAGCTGTTGTGGTCAGTTCGTAG
- Protein Sequence
- MSHGDRTDDEMRDCDSVDGDHHHQHQLGIKGSIASRLSHNGSGGALGFGSVRAHSPEQATDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAVAAHAAAFGANMLPTTISSAFPLPHNTVAAAAVANFGHVAPGLGAQAATNGSTAATNGGSYNGGSAAAAAVGACNAAAGANGTGSGNSAAGNAGAHPFSFASPTAPSAKEANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPMPGGMQQMSPLALVTHAAAANNQQAQAQAAAAAAAAHRRLMGAPGFGQMPNLVTQEFENRMMEYIQLIQAKKDQSAASGMLGNAAAAAAHHQQQQQQQQQQLQQQQQQQQRQRSQSPELSTREALSAQVLWHMYHNNNSPPASTHTSPQFGTATEQQREALNLSDSPPNLNNIKREREREPTPELVEHEEAPHQPPPAKRATNALIPPGFPASFYLNPHNMAAVAAAASFHHQANNSQHQQDVASEGEPEDDYANNEHNTTGNSSNMHDDNEPQLLNGHHPHHQQLHHSQHNNHLDKSDDSAIENSPSTSTSVSGGNRHSSPVSTKKKNVSKAQSSNKELQQPQSAAHSSALDALNLLSGLQFQVARNGTSEQGEQQLQVNLSLNGIKYTGVLVASAKTLDSVTAAEQDEQQETAAVNESSTETERANAAAAAAAEQQEDEENEQQQQECLVKCELDTSAIVNGASSNAVAAPASALSKEAVVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336505;
- 90% Identity
- iTF_00337295; iTF_00335648;
- 80% Identity
- -