Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:23778296-23781961[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.55 3.7e+02 1.7 0.0 21 43 192 214 182 219 0.84

2 19 0.031 21 5.7 0.0 21 43 220 242 214 250 0.88

3 19 9.2 6.2e+03 -2.2 0.1 21 30 285 294 276 297 0.83

4 19 1.8 1.2e+03 0.1 0.0 21 44 404 427 399 436 0.78

5 19 3.3 2.2e+03 -0.8 0.0 21 45 432 456 426 464 0.81

6 19 0.47 3.1e+02 2.0 0.1 21 43 460 482 454 486 0.83

7 19 0.076 51 4.5 0.4 10 45 477 512 469 521 0.73

8 19 4.2 2.8e+03 -1.1 0.2 21 36 516 531 510 541 0.78

9 19 0.31 2.1e+02 2.5 0.3 8 43 532 566 525 572 0.72

10 19 9.2 6.2e+03 -2.2 0.0 21 35 608 622 602 631 0.74

11 19 0.066 45 4.7 0.0 20 43 663 686 646 696 0.83

12 19 4.1 2.8e+03 -1.1 0.0 21 43 836 858 832 863 0.80

13 19 0.028 19 5.8 0.2 21 43 864 886 857 891 0.86

14 19 0.006 4 8.0 0.1 21 52 892 923 887 925 0.86

15 19 2.7 1.8e+03 -0.5 0.0 22 44 921 943 916 946 0.87

16 19 0.011 7.6 7.1 0.9 18 46 944 972 941 979 0.84

17 19 3.2 2.2e+03 -0.7 0.0 21 45 1097 1121 1091 1128 0.78

18 19 0.08 54 4.4 0.0 21 46 1125 1150 1114 1156 0.84

19 19 0.016 11 6.6 0.1 21 43 1153 1175 1147 1180 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.55	3.7e+02	1.7	0.0	21	43	192	214	182	219	0.84
2	19	0.031	21	5.7	0.0	21	43	220	242	214	250	0.88
3	19	9.2	6.2e+03	-2.2	0.1	21	30	285	294	276	297	0.83
4	19	1.8	1.2e+03	0.1	0.0	21	44	404	427	399	436	0.78
5	19	3.3	2.2e+03	-0.8	0.0	21	45	432	456	426	464	0.81
6	19	0.47	3.1e+02	2.0	0.1	21	43	460	482	454	486	0.83
7	19	0.076	51	4.5	0.4	10	45	477	512	469	521	0.73
8	19	4.2	2.8e+03	-1.1	0.2	21	36	516	531	510	541	0.78
9	19	0.31	2.1e+02	2.5	0.3	8	43	532	566	525	572	0.72
10	19	9.2	6.2e+03	-2.2	0.0	21	35	608	622	602	631	0.74
11	19	0.066	45	4.7	0.0	20	43	663	686	646	696	0.83
12	19	4.1	2.8e+03	-1.1	0.0	21	43	836	858	832	863	0.80
13	19	0.028	19	5.8	0.2	21	43	864	886	857	891	0.86
14	19	0.006	4	8.0	0.1	21	52	892	923	887	925	0.86
15	19	2.7	1.8e+03	-0.5	0.0	22	44	921	943	916	946	0.87
16	19	0.011	7.6	7.1	0.9	18	46	944	972	941	979	0.84
17	19	3.2	2.2e+03	-0.7	0.0	21	45	1097	1121	1091	1128	0.78
18	19	0.08	54	4.4	0.0	21	46	1125	1150	1114	1156	0.84
19	19	0.016	11	6.6	0.1	21	43	1153	1175	1147	1180	0.91

Sequence Information

Coding Sequence: ATGTATCAACAATTAAACACAGAATTTATTATTAAAGAAGAAATATTAGATAGAGACGATTCAGATGAATACGAATCAATCTATGAAAATGATTCTTTGCCAAGTTATGGAATTAAAAGTGAAATACTATATGATAATAATTTAGTTGAATGCAATGAACAGCAAACATTTTTTTGTGACACATGTGATGAAACGTTTTCCCATATTTCCAATTTAATTACACATCAACAAATTCATGTTGATCAAAAACCCCTTTCATTTAAAAAAGAAATAGCAGTTGATAAAATTGGTGAAAACTCATGGTCAAGTGAAGTGAATAAAATAATTAATAAAGGATACAATCTTGAAGATACTTATAAAGAACAATTTTCATGTAATACAAAAGGTAAAATAACATTTGACAAAGTAGCCGTAGTTGTTTTAGAAAGAATACAAATAGATGAAAAATTATTTAAAAGGGGATCTAATTTGGTAGTTGATAAAGAAAGTGATGGAAAAAGATTTTCATGTGAAGTTTGTGGTAGAAAATTCAGACAGGAATACACTTTAAAGGTACATAAAAGGATTCACACCGGAGAAAAACCACTTTGGTGTGATATTTGTAATAAAAGATTCAGACAAGATTCTTCCTTAATTGTACATAAGCGAATTCACACCGGAGAAAAACCATACTCATGCGATATTTGCGATAAAGAATTTAGACAAGAATCCAACTTAATTTCTCATAAAAAAACGCATAAACGAAAAAAAAGTTATCCATGTAATGCATGTAATAAAAAATTTGCTACACGAAATATTTTAATCGCCCATAAAAAAACTGACCATCAATCAAAGGCATCTAAACTTCCAAAGCGTGAAAAACCTTTTGCTTGTGACATTTGTGGTAAAACATTTATGTATGAGAAGTATTTCATCTTTCATAAGAAAATCCATGATGGAGACATTAAACCATACCCTTGTGATGCTTGTAACAAAATATTTACCACGAAGCATAGTTTAATCTTACACAAAAGAATACATGATGGAATAGTAACATTTTCGTGTGAAGCATGTGATAAAACTTTCACTCAACAAAGTCTGTTTATTTCTCATAAAAAAACTCATCCCGACGTATATTTCTCAAGTCCAAACAACGTATTTCCTTGTGATTTTTGTGATAAAACTTTCAAAGTTAAACAAACTTTAATTATTCATCGAAGAATTCATACAGGTGAGAGACCATTTTCATGTGATATATGTGATAAAAAATTTAGACATGAAGCTTCTCTACTTTCACATAAAAGAATTCACACAGGTGAAAAACCATTTTCTTGTGACACTTGTGATAGAAAATTTAGACAAGAAACTTCTTTAATTATACATAAAAGAATTCATACTGGAGAAAAGCCGTATTCATGCGATATTTGTAATAAAAAATTTAGACAACATCCTGGTTTAATTACTCACAAACGGACTCACACTGGAGAAAAACCATACTCTTGTGATATTTGTGATCGAAAATTTAGACAAGAAACTTCTTTAATCATACATAAAAGAATTCATACTGGAGAAAAGCCGTATTCATGCGATATTTGTAATAAAAAATTTACACAACATCCTGGTTTAATTACTCACAAACGGACTCACACTGGAGAAAAACCATACTCTTGTGATATTTGTGAAAAAAAATTCAGTCAGCAGATCAGTTTAAACAAGCATAAGAATACTCATAATAGAGAAAAAAGTGATTCCATCAATGAAAACGAATTATTTTCTTGTGATTTTTGTGATAAAACATTCAAGGCTATACAAGGTTTAATTATGCATAGAAAATTTCATACTAAAGAAAAGCCATTTGAATGTGATATATGTCCAAGAAAATTTACTCAGGAATCTGCTTTAATCGCGCATAAAATAATTCATACTGGTGAAAAAATATTTGAATGTGATTTTTGTGCTAAAAAATTTGGACAACAAGGCGGATTAACTGTACATAGAAGGATTCACACCGGAGAAAGACCATATTCTTGTGATATTTGTGATAAAGCATTTATCCAGAAAAACAATTTAATAAAACATAAGATAACTCATACTGGAAAAAAACCGTTTTCATGTGATGTTTGTAATAAATCGTTTGGATTCCAATCAAATTTAACGAAACATAAACGAATTCATACCGAAGGTGTACATTTTCTTGTACAAAAAAGAAGTCTTGCTAAAGGAAAATCTAAAAAATTTACCAACAAAGTTATTTTTAAAAGAACTCGCATTGGAGAAAAATCGTTAAGTTGTGATGTTTGCGGTAAACAATGTAACGGAAAACTTGGCTTAGTTCTACATAAAAGAAGCCATGTTGGAAAAGAACTTTTTCCATGTGATAAATGTAATGAAATATTTCCACGACAAAGTCAATTAATTGCTCATAGGAAAATTCATCCTGCTGAATTGAAATCATTTTCTTGTTCTTTTTGTGAAAAAAAATTTAATCTCAAAGCAGGGTTAATTAATCATCAAAGAATTCATACCGGAGAAAAACCATTTTCTTGCGATGTATGTGATAAAACATTTAGAGCAGAAAACACTTTAATCGTACATAAAAGACTTCATACTGGGGAAAAACCGTATACTTGTGAAATTTGTAATAAAAAATTTAGACAAGCGCCTGCTTTAGCTATTCATAAGAGGATTCATACGGGAGAAAAACCTTTTTCATGTAATGTTTGTAATAAAGCATTCAGGCAGAAATCCAATTTAATGACGCATGAGAAAATTCATAACAAGCAAAAACCTTTTTCTTGTAATGTTTGTAATAAAGGTTTTGGACAAGAGATCAACTTGGTCAAACATAAACGAATGCATGTCGAAAAACCTTTTTCTTGCAATATTTGTAATAAATGTTTTAGGCAAGAGTCCAGTTTAGTTAAACATAGACGAATACATGCCGAAAGAAAGCCTTTTCAATGTAATGTCTGTAATAAGATCTTTACCAGAAAAAATCATTTGGTTGCACATGAAAATTCGCACATTGAAATAGAAAATAATATAATTTCTGATAAAAAAATTAAGGCAGAAGAAAAATCTTTTCCATGTGATGTTTGCGGTATAACATTTATCAAGATAAAGGGTTTACTTATGCATAAACGTAAACATTTAGTAAATAAGTTTTCTTGTAATATTTGTAGTGCAAAGTTTCCCTTTAAACAAAGTTTATTTGCCCACAAACGAATTCATAAAATAAAATCATGTGATATTTGCAATAAAACATTTAAGTATGATTCTCTTTTAATTACACATTTGAGAAGTCATACTGGAGAGAAACCTTTTTCTTGTGATCTTTGCGATAAAACTTTTTCATGCCGAGGCAATTTAGAGACACATATGAGAACTCACACTGGAGAAAAGCCATACTCGTGTGGTTTTTGTGAAAAAACATTTAGACAGGAATCGAACTTAATTGTACATAAGCGAATTCACACCGGAGAAAAACCGTTTTCGTGTGAAATTTGTGATAGAAAATTCAGACAGGAATCGAATTTAATTAAACATAAACGAGCTCACCCTGAAAATTGTTTTTCATGTAATGTTTGTGGAGAAACCTTCGCTCATAAAGAGGCTTTGAAGATACATTGGGAAAATCATAAAGACGGAAATTTTGAAGAATGCTTAATTAAGGTAGAACTTGTATAA
Protein Sequence: MYQQLNTEFIIKEEILDRDDSDEYESIYENDSLPSYGIKSEILYDNNLVECNEQQTFFCDTCDETFSHISNLITHQQIHVDQKPLSFKKEIAVDKIGENSWSSEVNKIINKGYNLEDTYKEQFSCNTKGKITFDKVAVVVLERIQIDEKLFKRGSNLVVDKESDGKRFSCEVCGRKFRQEYTLKVHKRIHTGEKPLWCDICNKRFRQDSSLIVHKRIHTGEKPYSCDICDKEFRQESNLISHKKTHKRKKSYPCNACNKKFATRNILIAHKKTDHQSKASKLPKREKPFACDICGKTFMYEKYFIFHKKIHDGDIKPYPCDACNKIFTTKHSLILHKRIHDGIVTFSCEACDKTFTQQSLFISHKKTHPDVYFSSPNNVFPCDFCDKTFKVKQTLIIHRRIHTGERPFSCDICDKKFRHEASLLSHKRIHTGEKPFSCDTCDRKFRQETSLIIHKRIHTGEKPYSCDICNKKFRQHPGLITHKRTHTGEKPYSCDICDRKFRQETSLIIHKRIHTGEKPYSCDICNKKFTQHPGLITHKRTHTGEKPYSCDICEKKFSQQISLNKHKNTHNREKSDSINENELFSCDFCDKTFKAIQGLIMHRKFHTKEKPFECDICPRKFTQESALIAHKIIHTGEKIFECDFCAKKFGQQGGLTVHRRIHTGERPYSCDICDKAFIQKNNLIKHKITHTGKKPFSCDVCNKSFGFQSNLTKHKRIHTEGVHFLVQKRSLAKGKSKKFTNKVIFKRTRIGEKSLSCDVCGKQCNGKLGLVLHKRSHVGKELFPCDKCNEIFPRQSQLIAHRKIHPAELKSFSCSFCEKKFNLKAGLINHQRIHTGEKPFSCDVCDKTFRAENTLIVHKRLHTGEKPYTCEICNKKFRQAPALAIHKRIHTGEKPFSCNVCNKAFRQKSNLMTHEKIHNKQKPFSCNVCNKGFGQEINLVKHKRMHVEKPFSCNICNKCFRQESSLVKHRRIHAERKPFQCNVCNKIFTRKNHLVAHENSHIEIENNIISDKKIKAEEKSFPCDVCGITFIKIKGLLMHKRKHLVNKFSCNICSAKFPFKQSLFAHKRIHKIKSCDICNKTFKYDSLLITHLRSHTGEKPFSCDLCDKTFSCRGNLETHMRTHTGEKPYSCGFCEKTFRQESNLIVHKRIHTGEKPFSCEICDRKFRQESNLIKHKRAHPENCFSCNVCGETFAHKEALKIHWENHKDGNFEECLIKVELV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332624;
90% Identity: iTF_00332624;
80% Identity: iTF_00332624;