Ccar009670.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997755.1:23778296-23781961[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 5.8e-05 0.0012 19.5 1.7 1 23 57 79 57 79 0.97
2 36 1.4e-05 0.00031 21.4 1.3 1 23 168 190 168 190 0.98
3 36 0.0002 0.0044 17.8 0.8 3 23 198 218 198 218 0.99
4 36 1.6e-06 3.4e-05 24.4 1.0 1 23 224 246 224 246 0.99
5 36 0.023 0.5 11.3 0.4 1 23 252 275 252 275 0.97
6 36 0.11 2.4 9.2 1.4 1 23 289 311 289 311 0.90
7 36 0.0002 0.0044 17.8 1.4 1 23 318 340 318 340 0.98
8 36 7.7e-05 0.0017 19.1 1.9 1 23 346 368 346 368 0.98
9 36 4.6e-05 0.001 19.8 0.9 1 23 380 402 380 402 0.98
10 36 5.2e-05 0.0011 19.6 2.1 1 23 408 430 408 430 0.98
11 36 0.00012 0.0027 18.4 1.2 1 23 436 458 436 458 0.98
12 36 8.1e-05 0.0017 19.0 2.8 1 23 464 486 464 486 0.99
13 36 2.7e-05 0.00058 20.5 0.7 1 23 492 514 492 514 0.98
14 36 6.3e-05 0.0014 19.4 2.6 1 23 520 542 520 542 0.99
15 36 1.1e-05 0.00023 21.8 1.8 1 23 548 570 548 570 0.98
16 36 0.031 0.68 10.9 1.1 1 23 584 606 584 606 0.96
17 36 5e-05 0.0011 19.7 0.1 1 23 612 634 612 634 0.97
18 36 0.00064 0.014 16.2 0.3 1 23 640 662 640 662 0.98
19 36 2.5e-06 5.3e-05 23.8 0.5 1 23 668 690 668 690 0.98
20 36 5.1e-06 0.00011 22.8 1.9 1 23 696 718 696 718 0.98
21 36 0.16 3.5 8.7 0.9 2 23 756 777 755 777 0.96
22 36 1.4e-05 0.0003 21.4 0.2 1 23 783 805 783 805 0.98
23 36 0.00045 0.0098 16.7 0.9 1 23 812 834 812 834 0.98
24 36 0.00057 0.012 16.4 0.4 1 23 840 862 840 862 0.98
25 36 2.2e-05 0.00047 20.8 0.2 1 23 868 890 868 890 0.99
26 36 2.1e-06 4.5e-05 24.0 1.3 1 23 896 918 896 918 0.98
27 36 0.00013 0.0029 18.4 0.5 1 23 924 946 924 946 0.98
28 36 3.9e-06 8.5e-05 23.2 3.9 1 23 951 973 951 973 0.98
29 36 1.6e-05 0.00035 21.2 2.2 1 23 979 1001 979 1001 0.98
30 36 0.0043 0.094 13.6 0.2 1 23 1021 1043 1021 1043 0.98
31 36 0.0023 0.05 14.5 1.1 1 23 1048 1070 1048 1070 0.98
32 36 6.5e-05 0.0014 19.3 1.1 2 23 1074 1095 1073 1095 0.97
33 36 4.3e-05 0.00093 19.9 3.2 1 23 1101 1123 1101 1123 0.98
34 36 1.1e-05 0.00024 21.7 0.9 1 23 1129 1151 1129 1151 0.98
35 36 3.1e-06 6.7e-05 23.5 1.2 1 23 1157 1179 1157 1179 0.97
36 36 6.6e-05 0.0014 19.3 0.4 1 23 1184 1206 1184 1206 0.96

Sequence Information

Coding Sequence
ATGTATCAACAATTAAACACAGAATTTATTATTAAAGAAGAAATATTAGATAGAGACGATTCAGATGAATACGAATCAATCTATGAAAATGATTCTTTGCCAAGTTATGGAATTAAAAGTGAAATACTATATGATAATAATTTAGTTGAATGCAATGAACAGCAAACATTTTTTTGTGACACATGTGATGAAACGTTTTCCCATATTTCCAATTTAATTACACATCAACAAATTCATGTTGATCAAAAACCCCTTTCATTTAAAAAAGAAATAGCAGTTGATAAAATTGGTGAAAACTCATGGTCAAGTGAAGTGAATAAAATAATTAATAAAGGATACAATCTTGAAGATACTTATAAAGAACAATTTTCATGTAATACAAAAGGTAAAATAACATTTGACAAAGTAGCCGTAGTTGTTTTAGAAAGAATACAAATAGATGAAAAATTATTTAAAAGGGGATCTAATTTGGTAGTTGATAAAGAAAGTGATGGAAAAAGATTTTCATGTGAAGTTTGTGGTAGAAAATTCAGACAGGAATACACTTTAAAGGTACATAAAAGGATTCACACCGGAGAAAAACCACTTTGGTGTGATATTTGTAATAAAAGATTCAGACAAGATTCTTCCTTAATTGTACATAAGCGAATTCACACCGGAGAAAAACCATACTCATGCGATATTTGCGATAAAGAATTTAGACAAGAATCCAACTTAATTTCTCATAAAAAAACGCATAAACGAAAAAAAAGTTATCCATGTAATGCATGTAATAAAAAATTTGCTACACGAAATATTTTAATCGCCCATAAAAAAACTGACCATCAATCAAAGGCATCTAAACTTCCAAAGCGTGAAAAACCTTTTGCTTGTGACATTTGTGGTAAAACATTTATGTATGAGAAGTATTTCATCTTTCATAAGAAAATCCATGATGGAGACATTAAACCATACCCTTGTGATGCTTGTAACAAAATATTTACCACGAAGCATAGTTTAATCTTACACAAAAGAATACATGATGGAATAGTAACATTTTCGTGTGAAGCATGTGATAAAACTTTCACTCAACAAAGTCTGTTTATTTCTCATAAAAAAACTCATCCCGACGTATATTTCTCAAGTCCAAACAACGTATTTCCTTGTGATTTTTGTGATAAAACTTTCAAAGTTAAACAAACTTTAATTATTCATCGAAGAATTCATACAGGTGAGAGACCATTTTCATGTGATATATGTGATAAAAAATTTAGACATGAAGCTTCTCTACTTTCACATAAAAGAATTCACACAGGTGAAAAACCATTTTCTTGTGACACTTGTGATAGAAAATTTAGACAAGAAACTTCTTTAATTATACATAAAAGAATTCATACTGGAGAAAAGCCGTATTCATGCGATATTTGTAATAAAAAATTTAGACAACATCCTGGTTTAATTACTCACAAACGGACTCACACTGGAGAAAAACCATACTCTTGTGATATTTGTGATCGAAAATTTAGACAAGAAACTTCTTTAATCATACATAAAAGAATTCATACTGGAGAAAAGCCGTATTCATGCGATATTTGTAATAAAAAATTTACACAACATCCTGGTTTAATTACTCACAAACGGACTCACACTGGAGAAAAACCATACTCTTGTGATATTTGTGAAAAAAAATTCAGTCAGCAGATCAGTTTAAACAAGCATAAGAATACTCATAATAGAGAAAAAAGTGATTCCATCAATGAAAACGAATTATTTTCTTGTGATTTTTGTGATAAAACATTCAAGGCTATACAAGGTTTAATTATGCATAGAAAATTTCATACTAAAGAAAAGCCATTTGAATGTGATATATGTCCAAGAAAATTTACTCAGGAATCTGCTTTAATCGCGCATAAAATAATTCATACTGGTGAAAAAATATTTGAATGTGATTTTTGTGCTAAAAAATTTGGACAACAAGGCGGATTAACTGTACATAGAAGGATTCACACCGGAGAAAGACCATATTCTTGTGATATTTGTGATAAAGCATTTATCCAGAAAAACAATTTAATAAAACATAAGATAACTCATACTGGAAAAAAACCGTTTTCATGTGATGTTTGTAATAAATCGTTTGGATTCCAATCAAATTTAACGAAACATAAACGAATTCATACCGAAGGTGTACATTTTCTTGTACAAAAAAGAAGTCTTGCTAAAGGAAAATCTAAAAAATTTACCAACAAAGTTATTTTTAAAAGAACTCGCATTGGAGAAAAATCGTTAAGTTGTGATGTTTGCGGTAAACAATGTAACGGAAAACTTGGCTTAGTTCTACATAAAAGAAGCCATGTTGGAAAAGAACTTTTTCCATGTGATAAATGTAATGAAATATTTCCACGACAAAGTCAATTAATTGCTCATAGGAAAATTCATCCTGCTGAATTGAAATCATTTTCTTGTTCTTTTTGTGAAAAAAAATTTAATCTCAAAGCAGGGTTAATTAATCATCAAAGAATTCATACCGGAGAAAAACCATTTTCTTGCGATGTATGTGATAAAACATTTAGAGCAGAAAACACTTTAATCGTACATAAAAGACTTCATACTGGGGAAAAACCGTATACTTGTGAAATTTGTAATAAAAAATTTAGACAAGCGCCTGCTTTAGCTATTCATAAGAGGATTCATACGGGAGAAAAACCTTTTTCATGTAATGTTTGTAATAAAGCATTCAGGCAGAAATCCAATTTAATGACGCATGAGAAAATTCATAACAAGCAAAAACCTTTTTCTTGTAATGTTTGTAATAAAGGTTTTGGACAAGAGATCAACTTGGTCAAACATAAACGAATGCATGTCGAAAAACCTTTTTCTTGCAATATTTGTAATAAATGTTTTAGGCAAGAGTCCAGTTTAGTTAAACATAGACGAATACATGCCGAAAGAAAGCCTTTTCAATGTAATGTCTGTAATAAGATCTTTACCAGAAAAAATCATTTGGTTGCACATGAAAATTCGCACATTGAAATAGAAAATAATATAATTTCTGATAAAAAAATTAAGGCAGAAGAAAAATCTTTTCCATGTGATGTTTGCGGTATAACATTTATCAAGATAAAGGGTTTACTTATGCATAAACGTAAACATTTAGTAAATAAGTTTTCTTGTAATATTTGTAGTGCAAAGTTTCCCTTTAAACAAAGTTTATTTGCCCACAAACGAATTCATAAAATAAAATCATGTGATATTTGCAATAAAACATTTAAGTATGATTCTCTTTTAATTACACATTTGAGAAGTCATACTGGAGAGAAACCTTTTTCTTGTGATCTTTGCGATAAAACTTTTTCATGCCGAGGCAATTTAGAGACACATATGAGAACTCACACTGGAGAAAAGCCATACTCGTGTGGTTTTTGTGAAAAAACATTTAGACAGGAATCGAACTTAATTGTACATAAGCGAATTCACACCGGAGAAAAACCGTTTTCGTGTGAAATTTGTGATAGAAAATTCAGACAGGAATCGAATTTAATTAAACATAAACGAGCTCACCCTGAAAATTGTTTTTCATGTAATGTTTGTGGAGAAACCTTCGCTCATAAAGAGGCTTTGAAGATACATTGGGAAAATCATAAAGACGGAAATTTTGAAGAATGCTTAATTAAGGTAGAACTTGTATAA
Protein Sequence
MYQQLNTEFIIKEEILDRDDSDEYESIYENDSLPSYGIKSEILYDNNLVECNEQQTFFCDTCDETFSHISNLITHQQIHVDQKPLSFKKEIAVDKIGENSWSSEVNKIINKGYNLEDTYKEQFSCNTKGKITFDKVAVVVLERIQIDEKLFKRGSNLVVDKESDGKRFSCEVCGRKFRQEYTLKVHKRIHTGEKPLWCDICNKRFRQDSSLIVHKRIHTGEKPYSCDICDKEFRQESNLISHKKTHKRKKSYPCNACNKKFATRNILIAHKKTDHQSKASKLPKREKPFACDICGKTFMYEKYFIFHKKIHDGDIKPYPCDACNKIFTTKHSLILHKRIHDGIVTFSCEACDKTFTQQSLFISHKKTHPDVYFSSPNNVFPCDFCDKTFKVKQTLIIHRRIHTGERPFSCDICDKKFRHEASLLSHKRIHTGEKPFSCDTCDRKFRQETSLIIHKRIHTGEKPYSCDICNKKFRQHPGLITHKRTHTGEKPYSCDICDRKFRQETSLIIHKRIHTGEKPYSCDICNKKFTQHPGLITHKRTHTGEKPYSCDICEKKFSQQISLNKHKNTHNREKSDSINENELFSCDFCDKTFKAIQGLIMHRKFHTKEKPFECDICPRKFTQESALIAHKIIHTGEKIFECDFCAKKFGQQGGLTVHRRIHTGERPYSCDICDKAFIQKNNLIKHKITHTGKKPFSCDVCNKSFGFQSNLTKHKRIHTEGVHFLVQKRSLAKGKSKKFTNKVIFKRTRIGEKSLSCDVCGKQCNGKLGLVLHKRSHVGKELFPCDKCNEIFPRQSQLIAHRKIHPAELKSFSCSFCEKKFNLKAGLINHQRIHTGEKPFSCDVCDKTFRAENTLIVHKRLHTGEKPYTCEICNKKFRQAPALAIHKRIHTGEKPFSCNVCNKAFRQKSNLMTHEKIHNKQKPFSCNVCNKGFGQEINLVKHKRMHVEKPFSCNICNKCFRQESSLVKHRRIHAERKPFQCNVCNKIFTRKNHLVAHENSHIEIENNIISDKKIKAEEKSFPCDVCGITFIKIKGLLMHKRKHLVNKFSCNICSAKFPFKQSLFAHKRIHKIKSCDICNKTFKYDSLLITHLRSHTGEKPFSCDLCDKTFSCRGNLETHMRTHTGEKPYSCGFCEKTFRQESNLIVHKRIHTGEKPFSCEICDRKFRQESNLIKHKRAHPENCFSCNVCGETFAHKEALKIHWENHKDGNFEECLIKVELV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00333749;
90% Identity
iTF_00333749;
80% Identity
iTF_00333749;