Ccar006098.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:75748781-75750005[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.11 72 4.0 0.0 22 47 98 123 95 128 0.82 2 10 0.052 35 5.0 0.0 21 47 125 151 120 156 0.85 3 10 0.015 10 6.7 0.0 21 47 153 179 148 184 0.84 4 10 0.25 1.7e+02 2.8 0.0 21 47 181 207 178 213 0.84 5 10 0.24 1.6e+02 2.9 0.0 21 47 209 235 201 241 0.83 6 10 0.43 2.9e+02 2.1 0.1 21 46 237 262 233 270 0.82 7 10 2 1.4e+03 -0.1 0.0 21 43 265 287 257 291 0.76 8 10 0.19 1.3e+02 3.2 0.0 21 46 293 318 280 324 0.82 9 10 0.36 2.5e+02 2.3 0.1 21 46 321 346 314 353 0.81 10 10 2.1 1.4e+03 -0.1 0.0 21 43 349 371 342 375 0.75
Sequence Information
- Coding Sequence
- ATGGCAAATAATTATTTGTTTATTAATAAAGATAATATTAAAGTTGAAAAAGAATTACATACAGAACTAATTATTAAAAGTGAAATATTAGATGAAACTATTTTAATGGAAGGTGGACACATTACAAATGAAGAAGAAGGCAGCAATGATAGTGATAGTGTTGTGAGTGTAAAACATGAACCTGTTAGTGATGAAAATGATAAACAATTGTACACAATTAATTATGAAAACATTAAACTTGAACAAAAATTACATACAGAACTAATTATTAAAGATGAAACTGTTTTAGAAGAAAAATCATTTGTATGTGATGTTTGTAATAAAATATTTACTCAGAAAAGTAATTTAGTTAAACATAAACGTATTCACACCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCAGAAAGGTGAATTAGTTAGACATAAACGTATTCACAGCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCAGAAAAGTAATTTAGTTAAACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGCGATGTTTGTAATAAAACATTTACTCAGAAAGTTGAATTAGTTAAACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAAGATTTAATGAAAAAAGTAATTTAGTTAAACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAATCATTTACTCAACAACATCATTTAGTTGAACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAACATTTAATGAGAAAGGTGAATTAGTTAAACATAAACGTATTCACAGCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAAGATTTAATGAAAAAAGTAATTTAGTTAAACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAATCATTTACTCAACAACATCATTTAGTTGAACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAACATTTAATGAGAAAGGTGAATTAGTTAAACATAAACGTATTCACAATCGATAA
- Protein Sequence
- MANNYLFINKDNIKVEKELHTELIIKSEILDETILMEGGHITNEEEGSNDSDSVVSVKHEPVSDENDKQLYTINYENIKLEQKLHTELIIKDETVLEEKSFVCDVCNKIFTQKSNLVKHKRIHTGEKPFSCDVCNKTFTQKGELVRHKRIHSGEKPFSCDVCNKTFTQKSNLVKHKRIHTGEKPFSCDVCNKTFTQKVELVKHKRIHTGEKPFSCDVCNKRFNEKSNLVKHKRIHTGEKPFSCDVCNKSFTQQHHLVEHKRIHTGEKPFSCDVCNKTFNEKGELVKHKRIHSGEKPFSCDVCNKRFNEKSNLVKHKRIHTGEKPFSCDVCNKSFTQQHHLVEHKRIHTGEKPFSCDVCNKTFNEKGELVKHKRIHNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333140;
- 90% Identity
- iTF_00333733; iTF_00332968; iTF_00332859;
- 80% Identity
- iTF_00332859;