Ccar017764.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:18279097-18281601[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.043 29 5.3 0.1 21 46 159 184 135 190 0.91 2 8 0.97 6.5e+02 0.9 0.1 16 31 211 226 202 238 0.79 3 8 0.00088 0.59 10.7 0.3 18 47 240 269 227 275 0.86 4 8 1.1 7.5e+02 0.7 0.0 21 44 271 294 267 299 0.85 5 8 0.21 1.4e+02 3.1 0.1 21 43 299 321 293 326 0.86 6 8 0.016 11 6.7 0.0 21 46 327 352 320 354 0.89 7 8 0.54 3.7e+02 1.7 0.0 20 45 357 382 350 389 0.76 8 8 0.055 37 4.9 0.1 21 46 386 411 380 416 0.87
Sequence Information
- Coding Sequence
- ATGGCAAATAATTCATTTCATGATATAAACAACAGTAACCCTATAAATAAACAATTGTTCATGGATAAGAAAAATACTGAAGTTGAAAAACCCATAAATACAAAATTGATTATTATTAAAGACGAAATGTTAGAAGACAGTGACACCGTTAAAATCCAAGATGGACGAGTGAAAAATGAAATAATTGACCTAGAAGATAACAATAGTGTTACCATGAATGGAATACTATCCAGCAACAGTGCTATGGTAGATGGAAGTATTAAACTCGAAGACGACAGCAATAGTAGTAGTGTTGCAATGGAAAAAATACTATCGAATAGTAGTGAAAAAGACCCAGAATTAATTATTAAAGATGAAAGTGTTTTAGAACCACCGTTACAGGTACATACCGGTGAAAGAATATATGTGTGTTATTTTTGTAATCAAACATTTAATCAGCAAATGAGCTTAATTAAACATAAATTGATTGAGCATGGAGAAGAACCATCGATTTGTGATATTTGTAATAAAACATTTACAAATCGAAGTCATCTAAATCGACATAAAAAACTTCACATTGAACCAAAAACATTTATTTGTAATATTTGTAACAAAGAATTTAGTGATAGACCTAGTTTAGTTACCCATAAACGGACTCATCCCGAAGGTGAAAAACCATTTTTATGTGACATTTGTAGTAAAGCATTTAGCCATAAATCCAGTTTAGTTGAACATAAACGAATTCACAGAGAAAAACCATTTTCATGTAATATTTGTAATAAAGTAATTTCGAATCGAAATAGTTTAATTCGACATAAACGAATGCATACCGGGGAAAAACCATTTTTATGTGATGTTTGTAGTAAAGCATTTACCGATCGAAATGATTTAGTTAGACATACTAGAATTCATACGGGAGAAAAACCATATTCTTGTAATATATGTAATAAAGCATTTAGTGATTCATCCAGATTAGGTAAACATAAATGGGTTCATACGGGAGAAAAACCATTTTCTTGTGATATATGTCACAAAGCATTTAAAAAAAATGGTAATTTAACGACTCATAAACGTCTTCATAGTGAAGAAGGTCATGAAAAACCATTTTCTTGTCATGTTTGTAATAAAGCATTTAAAAAAAATAGTGACTTAGTTACACATCAACGTATTCATACTGGAGAGAAACCGTTTTCTTGTGATGTTTGTAACAAGTCATTTAATCGGCGAAGCAATTTAGTTAGGCATAAACAGATGCATACCCAAGAAAAATCATTATTTTTAATGCCACGTTCAGATTGA
- Protein Sequence
- MANNSFHDINNSNPINKQLFMDKKNTEVEKPINTKLIIIKDEMLEDSDTVKIQDGRVKNEIIDLEDNNSVTMNGILSSNSAMVDGSIKLEDDSNSSSVAMEKILSNSSEKDPELIIKDESVLEPPLQVHTGERIYVCYFCNQTFNQQMSLIKHKLIEHGEEPSICDICNKTFTNRSHLNRHKKLHIEPKTFICNICNKEFSDRPSLVTHKRTHPEGEKPFLCDICSKAFSHKSSLVEHKRIHREKPFSCNICNKVISNRNSLIRHKRMHTGEKPFLCDVCSKAFTDRNDLVRHTRIHTGEKPYSCNICNKAFSDSSRLGKHKWVHTGEKPFSCDICHKAFKKNGNLTTHKRLHSEEGHEKPFSCHVCNKAFKKNSDLVTHQRIHTGEKPFSCDVCNKSFNRRSNLVRHKQMHTQEKSLFLMPRSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332938;
- 90% Identity
- iTF_00332938;
- 80% Identity
- iTF_00332938;