Ccar017764.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:18279097-18281601[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00039 0.0085 16.9 1.2 1 23 135 158 135 158 0.96 2 10 3.1e-06 6.8e-05 23.5 4.0 3 23 165 185 163 185 0.96 3 10 5.2e-06 0.00011 22.8 0.7 1 23 191 213 191 213 0.98 4 10 1.7e-05 0.00037 21.2 1.7 1 23 220 242 220 242 0.95 5 10 1.9e-05 0.00041 21.0 1.1 1 23 247 269 247 269 0.98 6 10 1.4e-05 0.00031 21.4 0.4 1 23 275 297 275 297 0.95 7 10 0.00027 0.0059 17.4 0.6 1 19 303 321 303 325 0.93 8 10 8.1e-06 0.00018 22.2 3.4 1 23 331 353 331 353 0.98 9 10 1.2e-06 2.6e-05 24.8 2.6 1 23 362 384 362 384 0.98 10 10 5.1e-07 1.1e-05 26.0 2.1 1 23 390 412 390 412 0.98
Sequence Information
- Coding Sequence
- ATGGCAAATAATTCATTTCATGATATAAACAACAGTAACCCTATAAATAAACAATTGTTCATGGATAAGAAAAATACTGAAGTTGAAAAACCCATAAATACAAAATTGATTATTATTAAAGACGAAATGTTAGAAGACAGTGACACCGTTAAAATCCAAGATGGACGAGTGAAAAATGAAATAATTGACCTAGAAGATAACAATAGTGTTACCATGAATGGAATACTATCCAGCAACAGTGCTATGGTAGATGGAAGTATTAAACTCGAAGACGACAGCAATAGTAGTAGTGTTGCAATGGAAAAAATACTATCGAATAGTAGTGAAAAAGACCCAGAATTAATTATTAAAGATGAAAGTGTTTTAGAACCACCGTTACAGGTACATACCGGTGAAAGAATATATGTGTGTTATTTTTGTAATCAAACATTTAATCAGCAAATGAGCTTAATTAAACATAAATTGATTGAGCATGGAGAAGAACCATCGATTTGTGATATTTGTAATAAAACATTTACAAATCGAAGTCATCTAAATCGACATAAAAAACTTCACATTGAACCAAAAACATTTATTTGTAATATTTGTAACAAAGAATTTAGTGATAGACCTAGTTTAGTTACCCATAAACGGACTCATCCCGAAGGTGAAAAACCATTTTTATGTGACATTTGTAGTAAAGCATTTAGCCATAAATCCAGTTTAGTTGAACATAAACGAATTCACAGAGAAAAACCATTTTCATGTAATATTTGTAATAAAGTAATTTCGAATCGAAATAGTTTAATTCGACATAAACGAATGCATACCGGGGAAAAACCATTTTTATGTGATGTTTGTAGTAAAGCATTTACCGATCGAAATGATTTAGTTAGACATACTAGAATTCATACGGGAGAAAAACCATATTCTTGTAATATATGTAATAAAGCATTTAGTGATTCATCCAGATTAGGTAAACATAAATGGGTTCATACGGGAGAAAAACCATTTTCTTGTGATATATGTCACAAAGCATTTAAAAAAAATGGTAATTTAACGACTCATAAACGTCTTCATAGTGAAGAAGGTCATGAAAAACCATTTTCTTGTCATGTTTGTAATAAAGCATTTAAAAAAAATAGTGACTTAGTTACACATCAACGTATTCATACTGGAGAGAAACCGTTTTCTTGTGATGTTTGTAACAAGTCATTTAATCGGCGAAGCAATTTAGTTAGGCATAAACAGATGCATACCCAAGAAAAATCATTATTTTTAATGCCACGTTCAGATTGA
- Protein Sequence
- MANNSFHDINNSNPINKQLFMDKKNTEVEKPINTKLIIIKDEMLEDSDTVKIQDGRVKNEIIDLEDNNSVTMNGILSSNSAMVDGSIKLEDDSNSSSVAMEKILSNSSEKDPELIIKDESVLEPPLQVHTGERIYVCYFCNQTFNQQMSLIKHKLIEHGEEPSICDICNKTFTNRSHLNRHKKLHIEPKTFICNICNKEFSDRPSLVTHKRTHPEGEKPFLCDICSKAFSHKSSLVEHKRIHREKPFSCNICNKVISNRNSLIRHKRMHTGEKPFLCDVCSKAFTDRNDLVRHTRIHTGEKPYSCNICNKAFSDSSRLGKHKWVHTGEKPFSCDICHKAFKKNGNLTTHKRLHSEEGHEKPFSCHVCNKAFKKNSDLVTHQRIHTGEKPFSCDVCNKSFNRRSNLVRHKQMHTQEKSLFLMPRSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333740;
- 90% Identity
- iTF_00333740;
- 80% Identity
- iTF_00333740;