Ccar016939.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:62239174-62243224[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.046 31 5.2 0.1 22 47 113 138 105 143 0.84 2 22 0.21 1.4e+02 3.1 0.1 21 52 140 171 136 173 0.82 3 22 0.23 1.5e+02 3.0 0.0 21 47 168 194 163 199 0.84 4 22 0.044 30 5.2 0.1 21 48 196 223 188 228 0.85 5 22 0.65 4.4e+02 1.5 0.1 22 47 225 250 220 255 0.83 6 22 0.033 22 5.6 0.0 21 48 252 279 247 284 0.85 7 22 1.1 7.3e+02 0.8 0.1 22 44 281 303 275 308 0.86 8 22 0.048 32 5.1 0.1 21 48 308 335 303 340 0.85 9 22 0.7 4.7e+02 1.4 0.0 22 47 337 362 334 367 0.83 10 22 0.041 27 5.3 0.1 21 50 364 393 356 397 0.85 11 22 0.39 2.7e+02 2.2 0.1 22 52 393 423 388 425 0.85 12 22 0.92 6.2e+02 1.0 0.1 21 48 420 447 412 451 0.79 13 22 0.083 56 4.3 0.0 21 47 448 474 441 479 0.85 14 22 0.075 51 4.5 0.0 21 44 476 499 472 503 0.89 15 22 0.04 27 5.4 0.0 21 47 504 530 499 535 0.85 16 22 0.042 28 5.3 0.0 21 47 532 558 528 563 0.85 17 22 0.088 59 4.3 0.0 21 52 560 591 556 593 0.86 18 22 0.045 30 5.2 0.1 21 50 588 617 583 621 0.85 19 22 0.41 2.7e+02 2.1 0.0 22 52 617 647 613 649 0.85 20 22 1.8 1.2e+03 0.1 0.1 21 43 644 666 640 675 0.79 21 22 8.1 5.5e+03 -2.0 0.1 24 46 675 697 665 703 0.74 22 22 5.5 3.7e+03 -1.5 0.1 22 31 771 780 768 783 0.86
Sequence Information
- Coding Sequence
- ATGGCAATTAATGCATTTCAAGATATGGATATAAATAATGTTATCAAAGAAGAAAATATAAAACTTGAAAAACAACTGAACACAGAATTAATAATCAAAGATGAAATATTAGAAGACGTTAATGATGACATGGACACGGTCATTACAATGCAAGAGGGACAAATTGAAAATGAACTACAAGAAGACAGCAACATTGTTATAATGGAAGATATACCAAAAAAATTTGGTATAAACGAAATTTTAGCTGAAAATGTATTAGATCCACAACAAATAAATACTAGTACAAAACTATCATGTCATAAAAAAACTATCACCGAGAAAAAAACTATTGTTAGAGAAAAACGATTTACATGTGATATTTGTAATAAAACATTTACTAAAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTGTTCGAAGAGACAATCTAAATGCACATAAAAGAATTCACAATGCTGATAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTAAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGAGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGAAAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGAAAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGAGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGAAAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGAGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGAAAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGAGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTCTAAGATACAATCTAGTTGCACATACAAGAATTCACAATGCTGATAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGGCAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGGGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGAAAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGAGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTCTAAGATACAATCTAGTTGCACATACAAGAATTCACAATGCTGATAAATCATTTGCATGTGATATTTGTAATAAAACATTTGTTCGAAGAGGCAATCTAAATGCACATAAAAGAATGTACACTTGTGAAAAACCATTTGATATGGCTATAAATAATATTATCAAAGAAGAAAATATTAAACTTGAAAAACAACTGAACACAGAATTAATAATCAAAGAAGAAATATTAGAAGACGCTGATGAGGACAGAAAAATGCAACATGAACTACAAGAAGACAGCAACAGTGATGAAATTGTATTAGAACCACAACGAGTAAATATACGAATTTACACCGGGGAAAAACCATTTTCATGTAATATTTGTAATACAAGATACTCAGCGAAATTATAG
- Protein Sequence
- MAINAFQDMDINNVIKEENIKLEKQLNTELIIKDEILEDVNDDMDTVITMQEGQIENELQEDSNIVIMEDIPKKFGINEILAENVLDPQQINTSTKLSCHKKTITEKKTIVREKRFTCDICNKTFTKRSNLRAHTRIHTGEKPFACDICNKTFVRRDNLNAHKRIHNADKPFACDICNKTFTKRSDLTRHTRIHTGEKPFVCEICNKTFTGRSNLRAHTRIHTGKKPFACEICNKTFTERSDLTRHTRIHTGEKPFACDICNKTFTGRSNLRAHTRIHTGKKPFACEICNKTFTERSDLTRHTRIHTGEKPFVCEICNKTFTGRSNLRAHTRIHTGKKPFACEICNKTFTERSDLTRHTRIHTGEKPFVCEICNKTFTGRSNLRAHTRIHTGKKPFACEICNKTFTERSDLTRHTRIHTGEKPFVCEICNKTFTLRYNLVAHTRIHNADKPFACDICNKTFTGRSNLRAHTRIHTGEKPFACDICNKTFTGRSNLRAHTRIHTGEKPFACDICNKTFTGRSNLRAHTRIHTGEKPFACDICNKTFTGRSNLRAHTRIHTGEKPFACDICNKTFTERSDLTRHTRIHTGEKPFVCEICNKTFTGRSNLRAHTRIHTGKKPFACEICNKTFTERSDLTRHTRIHTGEKPFVCEICNKTFTLRYNLVAHTRIHNADKSFACDICNKTFVRRGNLNAHKRMYTCEKPFDMAINNIIKEENIKLEKQLNTELIIKEEILEDADEDRKMQHELQEDSNSDEIVLEPQRVNIRIYTGEKPFSCNICNTRYSAKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332597; iTF_00332630;
- 90% Identity
- iTF_00332597; iTF_00332630;
- 80% Identity
- iTF_00332597; iTF_00332630;