Ccar016939.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:62239174-62243224[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0015 1.2 9.6 1.5 12 38 111 134 99 138 0.88 2 22 0.029 24 5.4 0.7 6 29 134 156 129 167 0.73 3 22 0.11 87 3.6 1.0 17 38 172 190 157 194 0.74 4 22 0.00086 0.7 10.3 0.9 7 38 191 218 185 223 0.82 5 22 0.086 70 3.9 1.7 6 38 218 246 213 251 0.70 6 22 0.0042 3.4 8.1 0.8 11 38 251 274 241 279 0.80 7 22 0.072 59 4.2 1.3 6 38 274 302 269 304 0.68 8 22 0.00083 0.68 10.4 0.9 7 38 303 330 297 335 0.82 9 22 0.11 87 3.6 0.8 18 38 341 358 331 363 0.79 10 22 0.00087 0.71 10.3 0.9 7 38 359 386 353 391 0.82 11 22 0.14 1.1e+02 3.3 1.3 18 38 397 414 386 418 0.75 12 22 0.064 52 4.3 1.1 7 28 415 435 409 448 0.76 13 22 0.0043 3.5 8.1 0.6 15 38 450 470 437 475 0.79 14 22 0.0084 6.8 7.2 1.2 17 38 480 498 470 503 0.82 15 22 0.0093 7.6 7.0 1.3 17 38 508 526 498 531 0.82 16 22 0.0058 4.7 7.7 0.9 14 38 533 554 525 559 0.81 17 22 0.064 52 4.3 0.9 6 37 554 581 549 584 0.70 18 22 0.00086 0.7 10.3 0.8 7 38 583 610 577 614 0.82 19 22 0.14 1.1e+02 3.3 1.4 18 38 621 638 610 643 0.76 20 22 0.057 46 4.5 0.7 7 27 639 658 633 667 0.76 21 22 0.0072 5.9 7.4 0.4 6 31 666 690 661 696 0.77 22 22 0.26 2.1e+02 2.4 0.2 18 29 775 786 767 787 0.85
Sequence Information
- Coding Sequence
- ATGGCAATTAATGCATTTCAAGATATGGATATAAATAATGTTATCAAAGAAGAAAATATAAAACTTGAAAAACAACTGAACACAGAATTAATAATCAAAGATGAAATATTAGAAGACGTTAATGATGACATGGACACGGTCATTACAATGCAAGAGGGACAAATTGAAAATGAACTACAAGAAGACAGCAACATTGTTATAATGGAAGATATACCAAAAAAATTTGGTATAAACGAAATTTTAGCTGAAAATGTATTAGATCCACAACAAATAAATACTAGTACAAAACTATCATGTCATAAAAAAACTATCACCGAGAAAAAAACTATTGTTAGAGAAAAACGATTTACATGTGATATTTGTAATAAAACATTTACTAAAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTGTTCGAAGAGACAATCTAAATGCACATAAAAGAATTCACAATGCTGATAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTAAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGAGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGAAAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGAAAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGAGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGAAAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGAGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGAAAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGAGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTCTAAGATACAATCTAGTTGCACATACAAGAATTCACAATGCTGATAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGGCAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGGGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAGGGCACATACAAGAATTCACACTGGAAAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGAGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTCTAAGATACAATCTAGTTGCACATACAAGAATTCACAATGCTGATAAATCATTTGCATGTGATATTTGTAATAAAACATTTGTTCGAAGAGGCAATCTAAATGCACATAAAAGAATGTACACTTGTGAAAAACCATTTGATATGGCTATAAATAATATTATCAAAGAAGAAAATATTAAACTTGAAAAACAACTGAACACAGAATTAATAATCAAAGAAGAAATATTAGAAGACGCTGATGAGGACAGAAAAATGCAACATGAACTACAAGAAGACAGCAACAGTGATGAAATTGTATTAGAACCACAACGAGTAAATATACGAATTTACACCGGGGAAAAACCATTTTCATGTAATATTTGTAATACAAGATACTCAGCGAAATTATAG
- Protein Sequence
- MAINAFQDMDINNVIKEENIKLEKQLNTELIIKDEILEDVNDDMDTVITMQEGQIENELQEDSNIVIMEDIPKKFGINEILAENVLDPQQINTSTKLSCHKKTITEKKTIVREKRFTCDICNKTFTKRSNLRAHTRIHTGEKPFACDICNKTFVRRDNLNAHKRIHNADKPFACDICNKTFTKRSDLTRHTRIHTGEKPFVCEICNKTFTGRSNLRAHTRIHTGKKPFACEICNKTFTERSDLTRHTRIHTGEKPFACDICNKTFTGRSNLRAHTRIHTGKKPFACEICNKTFTERSDLTRHTRIHTGEKPFVCEICNKTFTGRSNLRAHTRIHTGKKPFACEICNKTFTERSDLTRHTRIHTGEKPFVCEICNKTFTGRSNLRAHTRIHTGKKPFACEICNKTFTERSDLTRHTRIHTGEKPFVCEICNKTFTLRYNLVAHTRIHNADKPFACDICNKTFTGRSNLRAHTRIHTGEKPFACDICNKTFTGRSNLRAHTRIHTGEKPFACDICNKTFTGRSNLRAHTRIHTGEKPFACDICNKTFTGRSNLRAHTRIHTGEKPFACDICNKTFTERSDLTRHTRIHTGEKPFVCEICNKTFTGRSNLRAHTRIHTGKKPFACEICNKTFTERSDLTRHTRIHTGEKPFVCEICNKTFTLRYNLVAHTRIHNADKSFACDICNKTFVRRGNLNAHKRMYTCEKPFDMAINNIIKEENIKLEKQLNTELIIKEEILEDADEDRKMQHELQEDSNSDEIVLEPQRVNIRIYTGEKPFSCNICNTRYSAKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333730;
- 90% Identity
- iTF_00333730;
- 80% Identity
- iTF_00333730;