Ccar020179.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:121789709-121790888[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.2 1.5e+03 -0.2 0.0 26 48 91 113 81 117 0.73 2 8 0.0051 3.4 8.2 0.0 21 46 114 139 110 147 0.88 3 8 0.0052 3.5 8.2 0.0 21 44 170 193 162 198 0.89 4 8 0.0046 3.1 8.4 0.0 21 46 198 223 195 229 0.90 5 8 1.3 9e+02 0.5 0.0 25 46 230 251 225 253 0.84 6 8 0.057 38 4.9 0.0 21 46 254 279 251 285 0.88 7 8 6.9 4.7e+03 -1.8 0.1 21 30 282 291 278 293 0.86 8 8 0.18 1.2e+02 3.3 0.0 24 46 313 335 303 339 0.84
Sequence Information
- Coding Sequence
- ATGAATGGTGAAAATATGAAGATAGAAAAATTATGTTCAGAGTTGATAATTAAGCATGAAGATAATGATGAAATGTTTAAAGAATTTTATTCAAGCAATCATAACATGTATGACGACGATATTGATAATAAAATAGAAATTATAGACAAGGAACGAATTAAAATTGAACAAGAATTACATTCAGAGCTAATGATTAAAGATGAAGAAGATGAAGATTACAATGAAGTGTTGGAAGTAACTAATTCGGATCATACTGGGGAAAGGATTTTCACATATAATGTGTGTGATAAAAAATTTACCCGAAAGAACAATTTAGATAGGCATATACGAATCCATACTGGGGAAAAACCTTTTACGTGTAATGTTTGTGATAAAAAATTTACCCAAAAGAACAATTTAGATAGCCATATACGAATTCATAATGAGAAAAAACGTTTTACCTGTAATCTGTGTGATAAAAACTTTTCCACAAAGCAAAGTTTAAATAGCCATATACGAATCCATACTGGGGAAAAACCTTTTACGTGTAATGTTTGTGATATAAACTTTTCCCGAAAGAACAATTTAGATAGGCACATACTAATTCATACTGGGGAAAAACCTTTTACATGTAATGTTTGTGATAAAAAATTTACCCAAAGGAACGATTTAGATAGGCATATACGAATTCATACTGGGGAAAAACGTTTTAAGTGTAATGTTTGTGATAAAAAATTTACCCAAAAGAACACTTTAGATAGGCATATACGAATTCATACTGGGGAAAAACCTTTTACGTGTAATGTTTGTGATAAAAACTTTTCCCGAAAGAACAATTTAGATAGCCATATACGAATTCATACTGGGGAAACACCTTACTCATGTGGTATTTGTGATAAGAAATTTAATTTGTTTATCACATTGGTTGGCCACGAACGGACTCATACAAAGAAAAAATCATTAACATGTGATATTTGCGTAAAAAAATTAGGCAACAAAATAAATTTAATGAAACATATACAAATTCATAAAGGACCTCCATATGCATGCCAAGACTGCGATCGAGTTTTTACCCACAAAAACGAATTAAACAATCATGAACATAAAAATCTTGCTGTTTTGATTAATTAA
- Protein Sequence
- MNGENMKIEKLCSELIIKHEDNDEMFKEFYSSNHNMYDDDIDNKIEIIDKERIKIEQELHSELMIKDEEDEDYNEVLEVTNSDHTGERIFTYNVCDKKFTRKNNLDRHIRIHTGEKPFTCNVCDKKFTQKNNLDSHIRIHNEKKRFTCNLCDKNFSTKQSLNSHIRIHTGEKPFTCNVCDINFSRKNNLDRHILIHTGEKPFTCNVCDKKFTQRNDLDRHIRIHTGEKRFKCNVCDKKFTQKNTLDRHIRIHTGEKPFTCNVCDKNFSRKNNLDSHIRIHTGETPYSCGICDKKFNLFITLVGHERTHTKKKSLTCDICVKKLGNKINLMKHIQIHKGPPYACQDCDRVFTHKNELNNHEHKNLAVLIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332613; iTF_00332889;
- 90% Identity
- iTF_00332613; iTF_00332889;
- 80% Identity
- iTF_00332613; iTF_00332889;