Ccar020179.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:121789709-121790888[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.042 34 4.9 0.1 20 40 93 110 91 113 0.91 2 9 0.0046 3.7 8.0 2.3 8 40 110 138 107 141 0.81 3 9 0.003 2.4 8.6 2.4 6 30 136 161 135 167 0.74 4 9 0.0054 4.4 7.8 0.9 8 39 166 193 163 197 0.81 5 9 0.058 48 4.5 1.6 14 39 199 221 191 224 0.73 6 9 0.0013 1.1 9.7 2.2 6 40 220 250 216 253 0.84 7 9 0.00021 0.17 12.3 1.7 8 40 250 278 247 280 0.81 8 9 0.32 2.6e+02 2.1 0.6 9 27 279 296 275 297 0.74 9 9 0.01 8.1 6.9 3.8 12 40 309 334 303 337 0.86
Sequence Information
- Coding Sequence
- ATGAATGGTGAAAATATGAAGATAGAAAAATTATGTTCAGAGTTGATAATTAAGCATGAAGATAATGATGAAATGTTTAAAGAATTTTATTCAAGCAATCATAACATGTATGACGACGATATTGATAATAAAATAGAAATTATAGACAAGGAACGAATTAAAATTGAACAAGAATTACATTCAGAGCTAATGATTAAAGATGAAGAAGATGAAGATTACAATGAAGTGTTGGAAGTAACTAATTCGGATCATACTGGGGAAAGGATTTTCACATATAATGTGTGTGATAAAAAATTTACCCGAAAGAACAATTTAGATAGGCATATACGAATCCATACTGGGGAAAAACCTTTTACGTGTAATGTTTGTGATAAAAAATTTACCCAAAAGAACAATTTAGATAGCCATATACGAATTCATAATGAGAAAAAACGTTTTACCTGTAATCTGTGTGATAAAAACTTTTCCACAAAGCAAAGTTTAAATAGCCATATACGAATCCATACTGGGGAAAAACCTTTTACGTGTAATGTTTGTGATATAAACTTTTCCCGAAAGAACAATTTAGATAGGCACATACTAATTCATACTGGGGAAAAACCTTTTACATGTAATGTTTGTGATAAAAAATTTACCCAAAGGAACGATTTAGATAGGCATATACGAATTCATACTGGGGAAAAACGTTTTAAGTGTAATGTTTGTGATAAAAAATTTACCCAAAAGAACACTTTAGATAGGCATATACGAATTCATACTGGGGAAAAACCTTTTACGTGTAATGTTTGTGATAAAAACTTTTCCCGAAAGAACAATTTAGATAGCCATATACGAATTCATACTGGGGAAACACCTTACTCATGTGGTATTTGTGATAAGAAATTTAATTTGTTTATCACATTGGTTGGCCACGAACGGACTCATACAAAGAAAAAATCATTAACATGTGATATTTGCGTAAAAAAATTAGGCAACAAAATAAATTTAATGAAACATATACAAATTCATAAAGGACCTCCATATGCATGCCAAGACTGCGATCGAGTTTTTACCCACAAAAACGAATTAAACAATCATGAACATAAAAATCTTGCTGTTTTGATTAATTAA
- Protein Sequence
- MNGENMKIEKLCSELIIKHEDNDEMFKEFYSSNHNMYDDDIDNKIEIIDKERIKIEQELHSELMIKDEEDEDYNEVLEVTNSDHTGERIFTYNVCDKKFTRKNNLDRHIRIHTGEKPFTCNVCDKKFTQKNNLDSHIRIHNEKKRFTCNLCDKNFSTKQSLNSHIRIHTGEKPFTCNVCDINFSRKNNLDRHILIHTGEKPFTCNVCDKKFTQRNDLDRHIRIHTGEKRFKCNVCDKKFTQKNTLDRHIRIHTGEKPFTCNVCDKNFSRKNNLDSHIRIHTGETPYSCGICDKKFNLFITLVGHERTHTKKKSLTCDICVKKLGNKINLMKHIQIHKGPPYACQDCDRVFTHKNELNNHEHKNLAVLIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333729;
- 90% Identity
- iTF_00333729;
- 80% Identity
- iTF_00333729;