Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:82605297-82607657[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.058 39 4.9 0.0 20 43 36 59 20 64 0.79

2 9 0.0047 3.2 8.3 0.0 17 48 117 148 109 152 0.86

3 9 3.9e-05 0.026 15.0 0.1 21 46 475 500 467 505 0.86

4 9 0.077 52 4.5 0.2 22 46 505 529 499 537 0.82

5 9 3.6 2.4e+03 -0.9 0.1 23 44 534 555 528 566 0.78

6 9 8.4 5.6e+03 -2.1 0.0 22 44 561 583 553 591 0.79

7 9 0.17 1.2e+02 3.3 0.1 21 43 616 638 609 642 0.87

8 9 0.0063 4.3 7.9 0.1 21 43 644 666 638 675 0.88

9 9 6.6 4.4e+03 -1.7 0.2 16 30 727 741 715 749 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.058	39	4.9	0.0	20	43	36	59	20	64	0.79
2	9	0.0047	3.2	8.3	0.0	17	48	117	148	109	152	0.86
3	9	3.9e-05	0.026	15.0	0.1	21	46	475	500	467	505	0.86
4	9	0.077	52	4.5	0.2	22	46	505	529	499	537	0.82
5	9	3.6	2.4e+03	-0.9	0.1	23	44	534	555	528	566	0.78
6	9	8.4	5.6e+03	-2.1	0.0	22	44	561	583	553	591	0.79
7	9	0.17	1.2e+02	3.3	0.1	21	43	616	638	609	642	0.87
8	9	0.0063	4.3	7.9	0.1	21	43	644	666	638	675	0.88
9	9	6.6	4.4e+03	-1.7	0.2	16	30	727	741	715	749	0.82

Sequence Information

Coding Sequence: ATGTCAAGTTATTCAATTCATGGTATAAGTAATCTGTTAATGAAAAATGAAAACTTAAAAATCAACCATAAATCACATACAGAATCCAAAATTAAGAAAGAAATACTAGATGAAAAACCTTTTTCATGTGATGTTTGTTATAAGACATTTAACCAATTACACCATTTAGTTTCCCATAAACGGACTCATACTGGTGAAAAAAGTTTTTTGTGTGATTTTTGTGGCAAAGCATTTAGATACAAAAATAATTTAGTTGATCATAAACGAATTCATACAGGAGAAAAACCGTATGCTTGTGATGCATGTGATAAAACATTTACCACTCATAACGATTTAGTAAAACATAAACGAAAACATACTGGCGAGAAACCTTACACATGTGATGTTTGTGGAAAATCATTTACTCAAAAAGGTAATCTTGCCAAACATCAACGGATCCTTCATAAGGGAGAAAAACTTGGGAAAGATTTTCATTGTGATGCGTGTGATAAATCATATACTCAGAAATGTAATTTAATTAAACATCAACGAATTGTTCATACTGGAGAAAGACCTTTTGCATGTAATACATGCGATAAATCATTTGTGACTCGACCTCTTTTAGTAAAACATAAACGGAACGCTCATGGAGAAGAACCTGTTCCAAATGAAGATCGTGATAGAATATTTACTAATCACATGAATTTACTTGGAAATAAACGTATTCAAACTGGATTGGATTTACGTTTTCCTTATGATATTTGTGATAAAACATTTACCAACAACTATAATTTATTAACAAATCAAGGACAGCAAACTGGAGTGGATTTACGATTTCCATATGATGTGTATGATAAGACATTTAACCAGAAGTTAATTGAAAGCAGGCAAATTAATACTGAAGTGAATCCATTTTCATATGCTAGTGGTGTTAGCAATACTGCAGAAAAGACTGAACCTATACAAGCAGTCCCAGCTGCAACAAACCCATCTAGCTCATTTATTCCACATCCAGACAATTTACGCCCTTCAATTGACACCACTGTCCATTCTGTTGAAAGTATAAAAAGTGAGCAACAAATAGATGCAGAATCTACAATCAAAGATGAAAATATTGAAAATGAGCAACAATTTAATTCTGATATCAAAATTAAAGAGGAAGTTTTCAAAGAAACTGTTGTACCTGAAACAAAGCGAACTCGTACCAAGAAAAAAACATTTTCATATGTTTGCGATAGTAGTGAGAGTAGCGGAGAGGATTTCGATGCAGATCCATCGTTCATTCCATCCCCTGCAAATTCTCATGCCTCTGATCATTCTTTCGAAGATATAAAACCTGAACAAAAATTAGAAATAGATTTAATAATTAAAGATGAAAATATTAAAATTGAAGAACAAGAAGAGATAAAAGAAGAAATAAAAGAAAGCGAACAAAAAGACGTTGAGGAAAAACCTTTTACATGTGATGTGTGTGAGAAAACATTTGCTAAAAAAAGAAATTTACGTAGGCATAAAAGACATATTCATATTAAAGAAAAAAGTTTTGCTTGTGAAATGTGCGATAAAGTATTTAGATTCCGTAGAAATTTAATTGAACATGAAAGAATTCATACTGGACACAAACCTTTCGCTTGTGATATTTGCGATAAAGCATTTACAATCAATCGGAGTTTAGTCGAGCACAAAAGAATGCATGCTGGAGACAGGCCATTCGCTTGTGATCTTTGTGATAAATCATTTACCAGTAATAGAAGTTTAACTGCACATAAAGGTATTCATACTGGCAAAAAACCTCACTTATGTGAAGAATGTGGACGAGGATTTTCAAAAATGCTCGATCTTCAACGCCATAAGCGAATACATACCGGGGAAAAACCGTATACATGTGATTTTTGTGGTAAAACGTTTAGAAATCGTTGCAATTTAGTTGATCATAGACGGATTCATTCTGGTGAGAAACCATTTACATGTGAAATTTGTGCAAAATCATTTAACAAGAAACTGAACTTGAATAGACATAAAATCACGCATACTAAAGAGAGACCTTATTCATGTACTGTTTGTGGTAAAACATTTGGTTATAAATCGAGTTTAGTGGAACATGAACGAATTATACATAATGGTGAAAAAGAATTTTCATGTGATATTTGTAATAAAAGATTTCCGAGACAAAATTATTTAGTAAAACATAAAAAACTTCATACTCGAGAAAAACCAGTACAGATTTATACATGTGATATTTGTAGTAAAGAATTTGGAAGGCCAAATCATTTGGCTAATCATAAGAAATCTCATATTGATAAAGCTGTAAAAACGTTTTTGAAAAAGAGTAAAAATTTGTTAAAAAAAGGTATAAATTTATCTTTTCAAAATAAATATTGA
Protein Sequence: MSSYSIHGISNLLMKNENLKINHKSHTESKIKKEILDEKPFSCDVCYKTFNQLHHLVSHKRTHTGEKSFLCDFCGKAFRYKNNLVDHKRIHTGEKPYACDACDKTFTTHNDLVKHKRKHTGEKPYTCDVCGKSFTQKGNLAKHQRILHKGEKLGKDFHCDACDKSYTQKCNLIKHQRIVHTGERPFACNTCDKSFVTRPLLVKHKRNAHGEEPVPNEDRDRIFTNHMNLLGNKRIQTGLDLRFPYDICDKTFTNNYNLLTNQGQQTGVDLRFPYDVYDKTFNQKLIESRQINTEVNPFSYASGVSNTAEKTEPIQAVPAATNPSSSFIPHPDNLRPSIDTTVHSVESIKSEQQIDAESTIKDENIENEQQFNSDIKIKEEVFKETVVPETKRTRTKKKTFSYVCDSSESSGEDFDADPSFIPSPANSHASDHSFEDIKPEQKLEIDLIIKDENIKIEEQEEIKEEIKESEQKDVEEKPFTCDVCEKTFAKKRNLRRHKRHIHIKEKSFACEMCDKVFRFRRNLIEHERIHTGHKPFACDICDKAFTINRSLVEHKRMHAGDRPFACDLCDKSFTSNRSLTAHKGIHTGKKPHLCEECGRGFSKMLDLQRHKRIHTGEKPYTCDFCGKTFRNRCNLVDHRRIHSGEKPFTCEICAKSFNKKLNLNRHKITHTKERPYSCTVCGKTFGYKSSLVEHERIIHNGEKEFSCDICNKRFPRQNYLVKHKKLHTREKPVQIYTCDICSKEFGRPNHLANHKKSHIDKAVKTFLKKSKNLLKKGINLSFQNKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332724;
90% Identity: iTF_00332724;
80% Identity: iTF_00332724;