Ccar011603.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997755.1:82605297-82607657[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00073 0.016 16.0 6.1 1 23 41 63 41 63 0.98
2 17 4.4e-05 0.00095 19.9 1.0 1 23 69 91 69 91 0.95
3 17 0.00013 0.0029 18.4 2.7 1 23 97 119 97 119 0.97
4 17 1.8e-08 4e-07 30.5 0.5 1 23 125 148 125 148 0.98
5 17 0.00015 0.0031 18.2 4.3 1 23 157 180 157 180 0.97
6 17 5.6e-05 0.0012 19.5 0.5 1 23 186 209 186 209 0.96
7 17 0.13 2.8 8.9 0.1 5 17 247 259 246 260 0.90
8 17 3.7e-05 0.00081 20.1 4.2 1 23 479 502 479 502 0.97
9 17 2.2e-05 0.00048 20.8 0.4 1 23 508 530 508 530 0.97
10 17 0.00017 0.0036 18.0 0.2 1 23 536 558 536 558 0.97
11 17 4.2e-05 0.0009 20.0 0.4 1 23 564 586 564 586 0.94
12 17 0.00078 0.017 15.9 1.4 3 23 594 614 592 614 0.96
13 17 8.9e-06 0.00019 22.1 3.8 1 23 620 642 620 642 0.99
14 17 6.4e-05 0.0014 19.4 1.6 1 23 648 670 648 670 0.98
15 17 1.3e-05 0.00028 21.5 0.2 1 23 676 699 676 699 0.97
16 17 4.5e-05 0.00097 19.8 2.0 1 23 705 727 705 727 0.97
17 17 7.9e-05 0.0017 19.1 1.6 1 23 736 758 736 758 0.98

Sequence Information

Coding Sequence
ATGTCAAGTTATTCAATTCATGGTATAAGTAATCTGTTAATGAAAAATGAAAACTTAAAAATCAACCATAAATCACATACAGAATCCAAAATTAAGAAAGAAATACTAGATGAAAAACCTTTTTCATGTGATGTTTGTTATAAGACATTTAACCAATTACACCATTTAGTTTCCCATAAACGGACTCATACTGGTGAAAAAAGTTTTTTGTGTGATTTTTGTGGCAAAGCATTTAGATACAAAAATAATTTAGTTGATCATAAACGAATTCATACAGGAGAAAAACCGTATGCTTGTGATGCATGTGATAAAACATTTACCACTCATAACGATTTAGTAAAACATAAACGAAAACATACTGGCGAGAAACCTTACACATGTGATGTTTGTGGAAAATCATTTACTCAAAAAGGTAATCTTGCCAAACATCAACGGATCCTTCATAAGGGAGAAAAACTTGGGAAAGATTTTCATTGTGATGCGTGTGATAAATCATATACTCAGAAATGTAATTTAATTAAACATCAACGAATTGTTCATACTGGAGAAAGACCTTTTGCATGTAATACATGCGATAAATCATTTGTGACTCGACCTCTTTTAGTAAAACATAAACGGAACGCTCATGGAGAAGAACCTGTTCCAAATGAAGATCGTGATAGAATATTTACTAATCACATGAATTTACTTGGAAATAAACGTATTCAAACTGGATTGGATTTACGTTTTCCTTATGATATTTGTGATAAAACATTTACCAACAACTATAATTTATTAACAAATCAAGGACAGCAAACTGGAGTGGATTTACGATTTCCATATGATGTGTATGATAAGACATTTAACCAGAAGTTAATTGAAAGCAGGCAAATTAATACTGAAGTGAATCCATTTTCATATGCTAGTGGTGTTAGCAATACTGCAGAAAAGACTGAACCTATACAAGCAGTCCCAGCTGCAACAAACCCATCTAGCTCATTTATTCCACATCCAGACAATTTACGCCCTTCAATTGACACCACTGTCCATTCTGTTGAAAGTATAAAAAGTGAGCAACAAATAGATGCAGAATCTACAATCAAAGATGAAAATATTGAAAATGAGCAACAATTTAATTCTGATATCAAAATTAAAGAGGAAGTTTTCAAAGAAACTGTTGTACCTGAAACAAAGCGAACTCGTACCAAGAAAAAAACATTTTCATATGTTTGCGATAGTAGTGAGAGTAGCGGAGAGGATTTCGATGCAGATCCATCGTTCATTCCATCCCCTGCAAATTCTCATGCCTCTGATCATTCTTTCGAAGATATAAAACCTGAACAAAAATTAGAAATAGATTTAATAATTAAAGATGAAAATATTAAAATTGAAGAACAAGAAGAGATAAAAGAAGAAATAAAAGAAAGCGAACAAAAAGACGTTGAGGAAAAACCTTTTACATGTGATGTGTGTGAGAAAACATTTGCTAAAAAAAGAAATTTACGTAGGCATAAAAGACATATTCATATTAAAGAAAAAAGTTTTGCTTGTGAAATGTGCGATAAAGTATTTAGATTCCGTAGAAATTTAATTGAACATGAAAGAATTCATACTGGACACAAACCTTTCGCTTGTGATATTTGCGATAAAGCATTTACAATCAATCGGAGTTTAGTCGAGCACAAAAGAATGCATGCTGGAGACAGGCCATTCGCTTGTGATCTTTGTGATAAATCATTTACCAGTAATAGAAGTTTAACTGCACATAAAGGTATTCATACTGGCAAAAAACCTCACTTATGTGAAGAATGTGGACGAGGATTTTCAAAAATGCTCGATCTTCAACGCCATAAGCGAATACATACCGGGGAAAAACCGTATACATGTGATTTTTGTGGTAAAACGTTTAGAAATCGTTGCAATTTAGTTGATCATAGACGGATTCATTCTGGTGAGAAACCATTTACATGTGAAATTTGTGCAAAATCATTTAACAAGAAACTGAACTTGAATAGACATAAAATCACGCATACTAAAGAGAGACCTTATTCATGTACTGTTTGTGGTAAAACATTTGGTTATAAATCGAGTTTAGTGGAACATGAACGAATTATACATAATGGTGAAAAAGAATTTTCATGTGATATTTGTAATAAAAGATTTCCGAGACAAAATTATTTAGTAAAACATAAAAAACTTCATACTCGAGAAAAACCAGTACAGATTTATACATGTGATATTTGTAGTAAAGAATTTGGAAGGCCAAATCATTTGGCTAATCATAAGAAATCTCATATTGATAAAGCTGTAAAAACGTTTTTGAAAAAGAGTAAAAATTTGTTAAAAAAAGGTATAAATTTATCTTTTCAAAATAAATATTGA
Protein Sequence
MSSYSIHGISNLLMKNENLKINHKSHTESKIKKEILDEKPFSCDVCYKTFNQLHHLVSHKRTHTGEKSFLCDFCGKAFRYKNNLVDHKRIHTGEKPYACDACDKTFTTHNDLVKHKRKHTGEKPYTCDVCGKSFTQKGNLAKHQRILHKGEKLGKDFHCDACDKSYTQKCNLIKHQRIVHTGERPFACNTCDKSFVTRPLLVKHKRNAHGEEPVPNEDRDRIFTNHMNLLGNKRIQTGLDLRFPYDICDKTFTNNYNLLTNQGQQTGVDLRFPYDVYDKTFNQKLIESRQINTEVNPFSYASGVSNTAEKTEPIQAVPAATNPSSSFIPHPDNLRPSIDTTVHSVESIKSEQQIDAESTIKDENIENEQQFNSDIKIKEEVFKETVVPETKRTRTKKKTFSYVCDSSESSGEDFDADPSFIPSPANSHASDHSFEDIKPEQKLEIDLIIKDENIKIEEQEEIKEEIKESEQKDVEEKPFTCDVCEKTFAKKRNLRRHKRHIHIKEKSFACEMCDKVFRFRRNLIEHERIHTGHKPFACDICDKAFTINRSLVEHKRMHAGDRPFACDLCDKSFTSNRSLTAHKGIHTGKKPHLCEECGRGFSKMLDLQRHKRIHTGEKPYTCDFCGKTFRNRCNLVDHRRIHSGEKPFTCEICAKSFNKKLNLNRHKITHTKERPYSCTVCGKTFGYKSSLVEHERIIHNGEKEFSCDICNKRFPRQNYLVKHKKLHTREKPVQIYTCDICSKEFGRPNHLANHKKSHIDKAVKTFLKKSKNLLKKGINLSFQNKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00333725;
90% Identity
iTF_00333725;
80% Identity
iTF_00333725;