Ccar008039.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
TFIP11
Assembly
GCA_905475395.1
Location
FR997757.1:62307144-62312310[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7.9e-94 9.3e-90 301.3 15.7 1 275 403 675 403 675 0.97
2 2 0.0019 22 4.9 0.3 239 272 684 717 676 720 0.84

Sequence Information

Coding Sequence
ATGTCGGGTGATGAAGTTGAAAAATTTGAAATAACAGATTATGATTTGGATAACGAATTTAATATAAATCGTCCACGAAGACGACCAACAAAACACCAACAAATCTATGGTATTTGGGCTGATGAAAGTGATGATGAAGATGACAATCGAAAATCAGGCCGATCGTCAAAATCTAAAGTGCCTAAAAATTATTCAGCACCAATTGGATTTGTTTCTGGTGGGATTCAAAATCAAAAGAAAAAAGATGGAGAGGATGAAAAATCCTCGGAAGATGATGAGGAGTCAATTACGTTTAACAAAAAGTCAAAAAATTATGTAGCAAATAGTTCAAGTGAATCAGAAGACGATTCAAAACCCTCATTTAGTAGATCGGCTCAACAGTTCAATAATTTTACGGAAACTAGTCAAGAAACAGCTGGATTAAGAAAAACTGGCCGACCATCGTTAAATACACCGTTAATGACCAAAGGTGTTGGAAATTGGGAACGTCATACAAAAGGAATTGGTGCAAAACTTCTATTACAAATGGGCTACAAACCTGGTATGGGATTGGGTAAAGATTTACAGGGTATTGCAAGGCCTGTTGAGGCACACTTACGTAAAGGTCGTGGAGCAATCGGAGCTTATGGACCTGAAAAGGCTGCAAAAATTGCAGATGAAAAGGCTGATGATCGCGATGATAATTCAAAACAAGCAAAAGATAAACAAAATAAATGGAAAAAGGAAGGGGAAGTTGCAGCAAGTAAAAAAAGTCGGTATTATTATAAAAGTGTGGACGATGTAATTGAACGGGGTAAACAACCTGGGGCATATCGAACGGTAGATTTAACAAGTAATTTAAGTAAGGTGAAAGTCATTGATATGAGGGGTCCGGAACAACGTGTACTCAGTGGTTATCATGCTTTAAGTGGCCCTAAAAAACCAGAAGGAGAAGGTGAATTATTTGAAGATATTGTTCACAAAAAATGTTCAAACTTTGCGTTACCAGAACTGCAACATAATCTGGACCTACTTGTTGATATTTGCGAACAGGATATTATTTGGGTTGATCGAAAAAAGCGACATTGCTGTGATCGTGTTGTAGCATTAGAACAAGAACGTAAAGGATTAACAGAAGTTACAGAAAAACAAGGACGGCAAATGAAAACGTTACAATCATTATTGGATATTGTCGAACGCTTGGTTGATCCATCTCATGCATTATCGTTACGACAAGTTGCTGATGAATTTAAAAACATACAAGAAAATTATTTTGAAGAATATTTAATATACGATTTGGGAGAATTAGCTCCAGGTCTTGTTGGTCCTTTGTTAACATCAGCGTTAGTCAGTTGGAATCCATTAACAGCACCAAATCAGTACACTGATGTATTTCAACAATGGAAGGAAATTCTCGATCAATCAAATCAACGGGGTACGCTTTCAGTTCATGCTCAAAGTGTATCGCAACCATACAATAATTTAGTTTGGTCTACATGGATGCCGGTAATTCGTGCAACAGTATCCACATGGAGTCCACGTGATTGTGATCCATTGATACGTTTATTGGATATTTGGAAACCAATTATACCAATGTGGATAATGGAAAATTTGTTAGAACAAGTAATTTTACCACAAATTAATTCAGAAGTGTTACAATGGAATCCATTAACTGATACAGTTCCTATACATGTATGGATACATCCATGGATTCCGTTAATGGGCCAACGGTTACAAGATAGTGTGTATCCAATTATTGAAGATAAATTAGGAACAGCTTTAACAAGTTGGCATCCATCAGATCGGTCTGCTAAATTAATGTTACGTCCGTGGCAACCAGCTATGTCTCCTGGTGCTTTTGCTGCATTTTTACATAAATATATTTTACCTAAACTTCAAGTCTGTTTGTCCAGCTTACATATTAATCCACATCAACAGCATTTAGATGCTTGGAATTGGGTAATGGATTGGTCAGATATGTTAAGTCCTCAAGCAATGTCTATATTACTTGATAAATGTTTTTTGCCACGTTGGCTTCAAACTTTAGCGTTATGGTTAAATCAACAGCCAAATTATACTGAAGTAACTGATTGGTTTATTGGTTGGAAAGGAATGTTTTCGGAGCAGTTACTACAACAACCAGCTGTTAAAGAGTGTTTTCGCAAAGCTTTAGAGTTAATGAACCGAGCAGTAAAACAACCAACTGGTCAACCTGGTGCACTTGAAACTGTATCATATTTAACAAATTTAGAAACCAATTTGCCACCACCACCGCCTCCAATTATTACAAATACACATTCAGAGACTTTGGCTCATGCTGTGCGTAATGCTAGCCAAATGCCACAAAGTTTAAGCTTTAAAGATATCATCGCAAAGAATTGTGAAGAGCGTGGTATATTATTTGTACCAATACCAAATCGTTATCGTGAAGCAAAACAAGTATATCGTATAGGAAATGGTTCAACACAATGTTATATCGATAAGAATGTAGTATTTGCAACGACAAATGGTACAAATTGGGCACCCACAAATTTAAATAACTTATTGGATATTGCATAA
Protein Sequence
MSGDEVEKFEITDYDLDNEFNINRPRRRPTKHQQIYGIWADESDDEDDNRKSGRSSKSKVPKNYSAPIGFVSGGIQNQKKKDGEDEKSSEDDEESITFNKKSKNYVANSSSESEDDSKPSFSRSAQQFNNFTETSQETAGLRKTGRPSLNTPLMTKGVGNWERHTKGIGAKLLLQMGYKPGMGLGKDLQGIARPVEAHLRKGRGAIGAYGPEKAAKIADEKADDRDDNSKQAKDKQNKWKKEGEVAASKKSRYYYKSVDDVIERGKQPGAYRTVDLTSNLSKVKVIDMRGPEQRVLSGYHALSGPKKPEGEGELFEDIVHKKCSNFALPELQHNLDLLVDICEQDIIWVDRKKRHCCDRVVALEQERKGLTEVTEKQGRQMKTLQSLLDIVERLVDPSHALSLRQVADEFKNIQENYFEEYLIYDLGELAPGLVGPLLTSALVSWNPLTAPNQYTDVFQQWKEILDQSNQRGTLSVHAQSVSQPYNNLVWSTWMPVIRATVSTWSPRDCDPLIRLLDIWKPIIPMWIMENLLEQVILPQINSEVLQWNPLTDTVPIHVWIHPWIPLMGQRLQDSVYPIIEDKLGTALTSWHPSDRSAKLMLRPWQPAMSPGAFAAFLHKYILPKLQVCLSSLHINPHQQHLDAWNWVMDWSDMLSPQAMSILLDKCFLPRWLQTLALWLNQQPNYTEVTDWFIGWKGMFSEQLLQQPAVKECFRKALELMNRAVKQPTGQPGALETVSYLTNLETNLPPPPPPIITNTHSETLAHAVRNASQMPQSLSFKDIIAKNCEERGILFVPIPNRYREAKQVYRIGNGSTQCYIDKNVVFATTNGTNWAPTNLNNLLDIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01060632;
90% Identity
iTF_01060632;
80% Identity
-