Cruf001694.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysomya rufifacies
Gene Symbol
sip1
Assembly
GCA_014858695.1
Location
JACGTJ010045007.1:80-3346[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.1e-96 9.5e-93 310.7 16.6 1 275 418 688 418 688 0.99
2 2 0.25 2.2e+03 -2.1 0.0 245 267 703 725 696 734 0.61

Sequence Information

Coding Sequence
ATGTCCGACAATGAATATGAACGTTTTGAGATAACCGACTATGATTTGGATAATGAATTTAATCCCAATAGATCCAGAAGAAAACAAACTAAACAGCAGCAAATTTATGGCATATGGGCTGATGATAGCGACAATGATGATAATGAAGATTCTTCTGGACGACGACGTGGACGCAAAGGACGCATGGGTTTGGGATCGTCGGGCAATCGCAGTAAAGATTATACAGCGCCAGTAAGTTTTGTGGCCGGTGGTATACAGCAGGCTGGTAAGAAAAAAGATAAGAAAGAAGAAGATGCAGAAGATGATAAGGAAAATCCTATAACTGATGAAGAGGATGAAATAAATGCACGTCCTGGATTTGGTAGAGGTGCCAGACCAACACTTATGGATGTAGATTCTGCACATACGAGTGATGATACGGATGAAGAACAGGAGAGTAGAAAACAACAAACACAACAAAAACCTTCTTATTATAAACCCCAACAAGTAGGGGGTTCAAATGTAGGAGCTTGGGAACAACATACACGTGGTATAGGAGCCAAATTGTTGTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCACAACCAGTAGAGGCACATGTTCGTAAAGGTAGAGGTGCTATCGGTGCTTATGGTCCAGAAACAGCAGCCAGTGTGGGTGGTAAAGGGCATAAACCTCAAATTGATGAAGACGTACGCGAAGCTAAAGAATTTAAAGAAAAGCTAAACAAATGGAAGAAAGCCGGTGATTCTAAGCAGGATAAAGGTTCAAAACGTTATTATTACAAATCGGTCGAAGAAGTTTTGGAAAAAGGCAAAAGTTCTAACTATATAATCAGTGATAAAATTAGTAAAAAACTAGGCAATGTTCCTGTCATAGATATGACTGGACCTGAAAAACGTGTCCTAAGTGGTTATCATGCTATAGGACAATCTAAAGTTATGGATGAAGATCTCTATGATCTTAATGAACATCCAAAAAAGTCCACCACTTCATTTGCGTTACCCGAACTTATGCACAATCTAACGCTAATCGTTAATATGTGTGAACAGGATATTATTTCCTTAGATTCAGCACAAAATGCAGCCAGTGAAAGACAAACCTCTTTGGAACAGGAAAAGAAACAATTACAAGAAATCGTACGGCTCGAAAGTGATCATATTAATACATTAGATAAAGTTTTGTCATTAGTAGATGAATTGACGGGCAATAGTATGGACTTGAATTTAGAACGAGCTGAAAAAATCTTTTTAGAATTGCAACAAGATTATACATCTGAATATAAACAGTTTGGTTTAGCGGACTTGGCTGCTGGCATTATAGCACCCTTGCTGAAGAATCATTTAAGTGAATGGAAACCCTTAGAGCAACCTACTTTATATGTAGACCTAATAAAAAAATGGCGTTCTATATTGGAAAGTCAAAATGATACACAAAACGAATCACGTTCTAACATATTCGATCCATATTCTTCGTTGGTATGGGCTGGAGTAATTCCTAGTTTTCGTTCTTGTGCAGAATTTTGGGATCCAAAACATCATCAATCAATGGCTGCTTTATTAGATTGTTGGGCTCCTTTATTTCCTACTTGGATTTTGGATTCGGTATTAGAACAATTGATTTTACCCCGATTAAGTACGGCTGTACGTAATTGGGATCCTCTAACGGATACTGTACCCATACACATTTGGATTTTACCTTGGAATTCTATATTGGGTCACAAAATGGAAGAGTTCATATTTCCCACGATACGTGAGAAATTGGGTAATGCTTTGCAGGCTTGGATGCCTCAAGATCGTTCGGCCAGAGCTATGTTGACACCCTGGAAGGGTGCATTTGATGATAGTGAAATGCAGGTTTTTCTATTACAGCACATCATACCCAAACTTCAATTGGTTTTAACAGAATTTGTTATAAATCCTTTGCAACAGGATTTGGAACCCTGGAATCAAGTATGGGAATGGCATGAACTTATACCCACCATACAAATGGCTCAACTTTTAGATAAATTTTTCTTTCCCAAATGGATGCAAGTTCTGGTCTTGTGGCTTAATCAATCTCCAGATTATGGTGAAATATCACGTTGGTATACGGGTTGGAAAAGTATGCTTTCTGAGCAAATTTTAAATGAGCCCAGCGTTAAGGAACATTTGCGCAGAGCCTTAGAAATAATGCATCGTGCTACAGATCAAATAACAAACAATTTACCTTTGAATGCTGCCGGCAATATGGGTGCAAATATCACAGCAACACCAGTACCACCACCGCCTCAACCTCCACCACCTCCTTCCATATTAGAATTGCCTGTTCCGGCTCCTGCCCAACTGGACTTTAAAGAATTGGTTTCGCGTAAATGTGCCGAAAGAGGAGTTTTATTTGCTCCACTACCTGGCAGAAGGGAAATGGGCAAACAAATCTATCGTGTAGGTAAATTGTATTGTTATATTGATCGTAATGTTTGTATGCTTAGTGATGGCACTTTTAAAAATTGGATACCTACGCCGCTGCAACCCATGATAGAGAGAGCTATAACGGGAATTTTGAATTAG
Protein Sequence
MSDNEYERFEITDYDLDNEFNPNRSRRKQTKQQQIYGIWADDSDNDDNEDSSGRRRGRKGRMGLGSSGNRSKDYTAPVSFVAGGIQQAGKKKDKKEEDAEDDKENPITDEEDEINARPGFGRGARPTLMDVDSAHTSDDTDEEQESRKQQTQQKPSYYKPQQVGGSNVGAWEQHTRGIGAKLLLXXXXXXXXXXXXXXXXXSQPVEAHVRKGRGAIGAYGPETAASVGGKGHKPQIDEDVREAKEFKEKLNKWKKAGDSKQDKGSKRYYYKSVEEVLEKGKSSNYIISDKISKKLGNVPVIDMTGPEKRVLSGYHAIGQSKVMDEDLYDLNEHPKKSTTSFALPELMHNLTLIVNMCEQDIISLDSAQNAASERQTSLEQEKKQLQEIVRLESDHINTLDKVLSLVDELTGNSMDLNLERAEKIFLELQQDYTSEYKQFGLADLAAGIIAPLLKNHLSEWKPLEQPTLYVDLIKKWRSILESQNDTQNESRSNIFDPYSSLVWAGVIPSFRSCAEFWDPKHHQSMAALLDCWAPLFPTWILDSVLEQLILPRLSTAVRNWDPLTDTVPIHIWILPWNSILGHKMEEFIFPTIREKLGNALQAWMPQDRSARAMLTPWKGAFDDSEMQVFLLQHIIPKLQLVLTEFVINPLQQDLEPWNQVWEWHELIPTIQMAQLLDKFFFPKWMQVLVLWLNQSPDYGEISRWYTGWKSMLSEQILNEPSVKEHLRRALEIMHRATDQITNNLPLNAAGNMGANITATPVPPPPQPPPPPSILELPVPAPAQLDFKELVSRKCAERGVLFAPLPGRREMGKQIYRVGKLYCYIDRNVCMLSDGTFKNWIPTPLQPMIERAITGILN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00975603;
90% Identity
-
80% Identity
-