Caen006840.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000005.1:1190354-1192298[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.4 5.2e+03 -0.8 0.0 28 43 56 71 49 78 0.72 2 7 3.5e-05 0.46 12.1 0.1 21 48 195 222 189 227 0.90 3 7 0.036 4.6e+02 2.5 0.0 24 44 227 251 223 256 0.76 4 7 0.027 3.6e+02 2.9 0.4 21 53 252 283 244 284 0.79 5 7 0.013 1.7e+02 3.9 0.1 21 44 358 381 352 389 0.90 6 7 0.046 6e+02 2.1 0.0 21 44 414 437 403 442 0.87 7 7 0.00016 2.1 10.0 0.0 21 46 442 467 438 470 0.92
Sequence Information
- Coding Sequence
- AtgtatgaaataaatgaaattaagATATTGCCAGAGTTTTCTTTGATATGTAGAGTCTGTCTGAATAATGGCCAATTGGAACCGTTGAATGAAACTTCTTTATCAACACTTTTAACGAAATTAACAGATTTCCAGATTGATCCGAATGATAGTGAACTTCCGACAAATATTTGCTATACATGTATaggaaagttgaatgaaatatctAGGTTCATAGGTATAGCAAAACATAGTAATAACTACCTCAGAAATCTCCTTAATGAAAGGAAATACAAAGTTGAAGATGCAGATTGTGACCAAGAATCTGTTGATGATGATACTTTCAATACCATTGATGACTTATTAAAAGAAGAATACTCTGAGTCAACTCTTGGAGaagctaaaactgaaaaaagaaaGAGGACCTGGCAAATTTCTCTGAAATGCAAGGCTTGTGGTGAACAATTTGATACCAAACAAAAACTCACTAAtcacaaacaaaaaaatgctGCCTGTAGGGTCATCAATGAATTCAAATGTAACCACTGTGATAAAGCATTTTCTACTAAGACACGTCTGAATGATCATATTAGAACTCATACCAAAGAGTCACCATATGGATGCAAGATATGCCTGAAAAAATTCAACCATGCATCAAACTTGAAAAGACATGTGAATTTGGTTCATAAGGGCTTGAAACCCTTCAAATGTGATATTTGTGGAAAAGAATTTGGAACTTTAATAAGACAAACAGAGCATCTCAGAGTTCACACAGGTGAAAGACCTCATGTCTGCAGCTACTGTGGTATGGCTTTCAAAAAATACTCCACCAGACGAGCTCATGAGGTGCGGCACAAAATAAAAAACGGCGAAATCCCCAAATGCGAGAAGCCCCCAAAAAAATACCCCCGGAAGCCTCCCAAAGACACAAATGACTTGCACTGTGAACTCTGTGATAAGATATTCTCTACCAAACACAGCCTCAACGTCCACAAGCAGATTCACTTGGGAGAAAAATCCTTCTTGTGCAACGTGTGCGGGAAGGGATTCATTCGCAAGAGCCACTTGGAGGTGCACGCCAGGATCCACACAGGCGAGAAACCCTTCGAGTGCTCGGAATGCGGCAAAAGATTCAGACAGGCCGGCTCCCTGAGAAATCACGTATTCATCCACAAAGGGCAGAGATCGTTCAAATGCGAGCTTTGTCAGAGGACTTTCGTGCAACTGGGCCATCTGAAGAGCCACCTGAAGACGCACAGCGGCGAGAAGCCCTACAAGTGCACTTTTTGTGGCAAAGAGTTCGCGCAGAACGGGAACCTCAAGGCGCACACCAGGATTCACACTGGCGAGAGGCCTTACAGGTGCGGAGTCTGCTTTGCAGGATTCTGCGACTCCACCAGCCTCAAGAAGCACCTGAAGATCCACGAAGGCGGTGAAGAGAAAAGTGAAATGATCaattga
- Protein Sequence
- MYEINEIKILPEFSLICRVCLNNGQLEPLNETSLSTLLTKLTDFQIDPNDSELPTNICYTCIGKLNEISRFIGIAKHSNNYLRNLLNERKYKVEDADCDQESVDDDTFNTIDDLLKEEYSESTLGEAKTEKRKRTWQISLKCKACGEQFDTKQKLTNHKQKNAACRVINEFKCNHCDKAFSTKTRLNDHIRTHTKESPYGCKICLKKFNHASNLKRHVNLVHKGLKPFKCDICGKEFGTLIRQTEHLRVHTGERPHVCSYCGMAFKKYSTRRAHEVRHKIKNGEIPKCEKPPKKYPRKPPKDTNDLHCELCDKIFSTKHSLNVHKQIHLGEKSFLCNVCGKGFIRKSHLEVHARIHTGEKPFECSECGKRFRQAGSLRNHVFIHKGQRSFKCELCQRTFVQLGHLKSHLKTHSGEKPYKCTFCGKEFAQNGNLKAHTRIHTGERPYRCGVCFAGFCDSTSLKKHLKIHEGGEEKSEMIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00330922;
- 90% Identity
- iTF_00330922;
- 80% Identity
- iTF_00330922;