Basic Information

Insect: Chrysomela aeneicollis
Gene Symbol: -
Assembly: GCA_027562985.1
Location: JARUHR010000005.1:1190354-1192298[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0045 0.69 11.9 1.0 2 21 141 160 140 161 0.93

2 11 2.7e-07 4.1e-05 25.2 4.2 1 23 171 193 171 193 0.99

3 11 2.4e-05 0.0037 19.1 1.7 3 23 201 222 199 222 0.95

4 11 0.0005 0.076 15.0 0.3 1 23 228 250 228 250 0.98

5 11 0.0029 0.44 12.6 1.9 1 23 256 278 256 278 0.94

6 11 5.7e-05 0.0087 17.9 3.6 2 23 307 328 306 328 0.96

7 11 4.5e-07 6.8e-05 24.6 0.6 1 23 334 356 334 356 0.95

8 11 7.2e-07 0.00011 23.9 0.4 1 23 362 384 362 384 0.96

9 11 3.3e-06 0.00051 21.8 3.2 1 23 390 412 390 412 0.99

10 11 5.8e-08 8.9e-06 27.3 0.7 1 23 418 440 418 440 0.99

11 11 0.00012 0.018 17.0 1.9 1 23 446 468 446 468 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0045	0.69	11.9	1.0	2	21	141	160	140	161	0.93
2	11	2.7e-07	4.1e-05	25.2	4.2	1	23	171	193	171	193	0.99
3	11	2.4e-05	0.0037	19.1	1.7	3	23	201	222	199	222	0.95
4	11	0.0005	0.076	15.0	0.3	1	23	228	250	228	250	0.98
5	11	0.0029	0.44	12.6	1.9	1	23	256	278	256	278	0.94
6	11	5.7e-05	0.0087	17.9	3.6	2	23	307	328	306	328	0.96
7	11	4.5e-07	6.8e-05	24.6	0.6	1	23	334	356	334	356	0.95
8	11	7.2e-07	0.00011	23.9	0.4	1	23	362	384	362	384	0.96
9	11	3.3e-06	0.00051	21.8	3.2	1	23	390	412	390	412	0.99
10	11	5.8e-08	8.9e-06	27.3	0.7	1	23	418	440	418	440	0.99
11	11	0.00012	0.018	17.0	1.9	1	23	446	468	446	468	0.99

Sequence Information

Coding Sequence: AtgtatgaaataaatgaaattaagATATTGCCAGAGTTTTCTTTGATATGTAGAGTCTGTCTGAATAATGGCCAATTGGAACCGTTGAATGAAACTTCTTTATCAACACTTTTAACGAAATTAACAGATTTCCAGATTGATCCGAATGATAGTGAACTTCCGACAAATATTTGCTATACATGTATaggaaagttgaatgaaatatctAGGTTCATAGGTATAGCAAAACATAGTAATAACTACCTCAGAAATCTCCTTAATGAAAGGAAATACAAAGTTGAAGATGCAGATTGTGACCAAGAATCTGTTGATGATGATACTTTCAATACCATTGATGACTTATTAAAAGAAGAATACTCTGAGTCAACTCTTGGAGaagctaaaactgaaaaaagaaaGAGGACCTGGCAAATTTCTCTGAAATGCAAGGCTTGTGGTGAACAATTTGATACCAAACAAAAACTCACTAAtcacaaacaaaaaaatgctGCCTGTAGGGTCATCAATGAATTCAAATGTAACCACTGTGATAAAGCATTTTCTACTAAGACACGTCTGAATGATCATATTAGAACTCATACCAAAGAGTCACCATATGGATGCAAGATATGCCTGAAAAAATTCAACCATGCATCAAACTTGAAAAGACATGTGAATTTGGTTCATAAGGGCTTGAAACCCTTCAAATGTGATATTTGTGGAAAAGAATTTGGAACTTTAATAAGACAAACAGAGCATCTCAGAGTTCACACAGGTGAAAGACCTCATGTCTGCAGCTACTGTGGTATGGCTTTCAAAAAATACTCCACCAGACGAGCTCATGAGGTGCGGCACAAAATAAAAAACGGCGAAATCCCCAAATGCGAGAAGCCCCCAAAAAAATACCCCCGGAAGCCTCCCAAAGACACAAATGACTTGCACTGTGAACTCTGTGATAAGATATTCTCTACCAAACACAGCCTCAACGTCCACAAGCAGATTCACTTGGGAGAAAAATCCTTCTTGTGCAACGTGTGCGGGAAGGGATTCATTCGCAAGAGCCACTTGGAGGTGCACGCCAGGATCCACACAGGCGAGAAACCCTTCGAGTGCTCGGAATGCGGCAAAAGATTCAGACAGGCCGGCTCCCTGAGAAATCACGTATTCATCCACAAAGGGCAGAGATCGTTCAAATGCGAGCTTTGTCAGAGGACTTTCGTGCAACTGGGCCATCTGAAGAGCCACCTGAAGACGCACAGCGGCGAGAAGCCCTACAAGTGCACTTTTTGTGGCAAAGAGTTCGCGCAGAACGGGAACCTCAAGGCGCACACCAGGATTCACACTGGCGAGAGGCCTTACAGGTGCGGAGTCTGCTTTGCAGGATTCTGCGACTCCACCAGCCTCAAGAAGCACCTGAAGATCCACGAAGGCGGTGAAGAGAAAAGTGAAATGATCaattga
Protein Sequence: MYEINEIKILPEFSLICRVCLNNGQLEPLNETSLSTLLTKLTDFQIDPNDSELPTNICYTCIGKLNEISRFIGIAKHSNNYLRNLLNERKYKVEDADCDQESVDDDTFNTIDDLLKEEYSESTLGEAKTEKRKRTWQISLKCKACGEQFDTKQKLTNHKQKNAACRVINEFKCNHCDKAFSTKTRLNDHIRTHTKESPYGCKICLKKFNHASNLKRHVNLVHKGLKPFKCDICGKEFGTLIRQTEHLRVHTGERPHVCSYCGMAFKKYSTRRAHEVRHKIKNGEIPKCEKPPKKYPRKPPKDTNDLHCELCDKIFSTKHSLNVHKQIHLGEKSFLCNVCGKGFIRKSHLEVHARIHTGEKPFECSECGKRFRQAGSLRNHVFIHKGQRSFKCELCQRTFVQLGHLKSHLKTHSGEKPYKCTFCGKEFAQNGNLKAHTRIHTGERPYRCGVCFAGFCDSTSLKKHLKIHEGGEEKSEMIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00331212;
90% Identity: iTF_00331212;
80% Identity: iTF_00331212;