Chae039664.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282595.1:4187524-4191200[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6.1e-05 0.94 11.4 0.8 20 48 303 331 284 334 0.77 2 9 0.38 5.9e+03 -0.8 0.1 16 40 356 380 348 387 0.77 3 9 0.03 4.6e+02 2.8 0.1 21 43 417 439 412 444 0.88 4 9 0.0084 1.3e+02 4.5 0.0 21 48 445 472 440 474 0.88 5 9 0.53 8.2e+03 -1.2 0.2 26 50 579 603 564 607 0.76 6 9 0.0051 79 5.2 0.1 13 43 621 651 609 657 0.88 7 9 5.6e-06 0.087 14.7 0.8 16 51 652 687 649 689 0.86 8 9 1.7 2.6e+04 -2.9 0.0 23 43 716 736 712 740 0.80 9 9 0.0017 26 6.7 0.0 21 44 770 793 766 798 0.91
Sequence Information
- Coding Sequence
- ATGGAAGAAAACAAAGAATCCCTAATGGAGCCATCCGAAGAAAACGCAATTACAGAAATCATCAGCATAAATGTAATTTGTAGATTGTGTGCCAATCAAAACGATAAACTAATTGGAATATTTAGCGAAAACGGTCTTAGTAACGATTTAGCATCGAAAATGAACCTGTATCTTCCTGTAAAAGTATATGAAACGGATGAATTACCCCTTCAGTGCTGCTGGCAGTGCGCCTCTACAGTTTTAGCTTGGCACGATTTGTTTTTAACTAGCCTAGAAGCTGACCGAAGGCTGAGGAGCTACCAATTTGTATCCGAGAGGCAACTGAAGAGCGTTGAGAGTTACGTTGAGACTGATACACACCAACAACAACAAGAGGATGAACCTGAAGGAACTAAACACAATGTTCTCGTCAAAAATGAATCAGAACAAATCGTAAAACCTGAAGTAGCAGAATACGAGACGAGCAATGAAAGCTTGACTGATTTAGTCACCTTGGAACCCCGTTATTTGCAACTCAGCCCAGTTGTATATGAAATGGAGAAAGAGAAAACTGACGAGACAGATACAGTAAATTCAAAGCCAGAAGAAATTGACCAAATATTCGAAGGAGAACCAGAACATTTGGAAGAAAAGGAGACCACTTGTTACGGATGTCAGACTTGCCAAATGGTGTTTCTCAATGAACAAGAGATGGTCGTTCACCTTTCGGAGGTTCATCCTGAGGAGGACTTCAAACCAAACACACCGAAAAATAACAAGAAAGACAAAAGGAAAAACACGAAAATCGACCAGGACCTCGTCAATTCCGCCAAAATAATCGTAGACGGTAAAATCTACTACAACTGTAAAGAGTGTGGCAGGTGTCTCCATTCACCTTACACCTACGTGTGGCACATGCGCATACACACAGGAGAACGTCCCCACACATGTCACCTGTGCGGCAAGTGCTTCCGAGTGTCCCAAGGCCTGGTGCGACATTTGAAAGAAACCCACCAGGGCATCAAGAACTTCCCCTGTGACCTATGCGGAAGAATGTTCGCGACGCGGCGCAACGTGGAGGAGCATCGCAGGATCCACACCAACGAGCGCCCTTATGTCTGTGACCTGTGCGGGAAGTCGTTCAAACAGAAGGCGTCTTTGTTTGTGCATAATCGCTCACACACCGACTCTTTTCCATTCAAGTGTTCGTATTGTGAGCAGATGTTCAGGACTAAGCCTCCTTTGATGATACATATCACGAAACACACTGGGGAGAAGCCCTACCCTTGCGACATATGTGGTAGGCATTTCCGAATCAAGTATGAGCTGAAGAGGCATAGGCTCATTCATTCTGATGAAAAACCTTTTGCTTGTGTTATGTGCGGGTTGAGCTTCAAACAGAAAAGATATCTGAagaatcataacaagcaaaatCATAGTACGCTTGATTTGGCAACAGATACCGTACAATATGAAGAGGAATACCATCAAGAAAGCAGCCATTTTCCTAACACTGATCCGGTCTCTACAGACGCAGAAAACCCGAATATCACCAACACAGAACCCGAAGAAGAGCAAGAAACAGCCGATAACATCTCCGAATATCTTCGAGCAGTCGACTTACTATCAAAAACGTGCAAACTCTGCGAACGGCCTTTCACCAACAAGACCGAACTGAAAAACCACATGTTCTCCTCGCATAACCTCAAACAGCCGAAATTCCGTCGAAAAAAGACCGAAATCGACGCGCTTTTCTGCTGTCCGGAATGCAGGAAGCGATTCACGAGAAAATTCGACATGCAAAAACACTTACAGAACAAACACCCCGACAAAACCAGCACCATAAAACCTTCGGTCAAATCGAAAAACGTGGAAATACTGGAAAAATGCAAATCCCTCAGCGAGAATCGGTCTTACTATACCTGCGACGTCTGCAACAGCAAGTTCGGCAAGAGCAGCAGCTTGATGCGACATAGGAGCGGGCATTTCAACGAAAAGCCTTACTGCTGCCACATCTGCGGCGCGAAGTTTCGAATGTCAGCGCACCTCACCAGGCACATCGACCAACTGCACCATGACAAGAAAAGATTCAGCTGCATGTACTGCGACCTGTTGTTCAAGAGCAAGCCCACCAGAGACGAGCACTTGAACATACACACCCAGGCCAGGCCGTTCATGTGCGACGTTTGCGGCAAGGCGTTCAAGCAGAAAGCGTCGCTGTACGTGCACAAGAAGTTCCACAAGGACGTTTTTCCTTTTTCGTGCAACGTCTGCGGAAAGAAGTACCGGAGGAAAAGCGAGCTGAAAGTGCACCAGTGGATACACAGCGGGGAGAGACCTTACAGCTGTGACATCTGCAAGAAGTCGTTTAGATTGGGGCAGGATTTGAAGAGGCATTACAGGACGCATGCTACATATACCTGCGGCGAATGCAATTTGAGTTTTGATCAGATGAAGTCGTTCAAGGCGCACAAGAAATTGCACGAGAACACAAAACGTTAG
- Protein Sequence
- MEENKESLMEPSEENAITEIISINVICRLCANQNDKLIGIFSENGLSNDLASKMNLYLPVKVYETDELPLQCCWQCASTVLAWHDLFLTSLEADRRLRSYQFVSERQLKSVESYVETDTHQQQQEDEPEGTKHNVLVKNESEQIVKPEVAEYETSNESLTDLVTLEPRYLQLSPVVYEMEKEKTDETDTVNSKPEEIDQIFEGEPEHLEEKETTCYGCQTCQMVFLNEQEMVVHLSEVHPEEDFKPNTPKNNKKDKRKNTKIDQDLVNSAKIIVDGKIYYNCKECGRCLHSPYTYVWHMRIHTGERPHTCHLCGKCFRVSQGLVRHLKETHQGIKNFPCDLCGRMFATRRNVEEHRRIHTNERPYVCDLCGKSFKQKASLFVHNRSHTDSFPFKCSYCEQMFRTKPPLMIHITKHTGEKPYPCDICGRHFRIKYELKRHRLIHSDEKPFACVMCGLSFKQKRYLKNHNKQNHSTLDLATDTVQYEEEYHQESSHFPNTDPVSTDAENPNITNTEPEEEQETADNISEYLRAVDLLSKTCKLCERPFTNKTELKNHMFSSHNLKQPKFRRKKTEIDALFCCPECRKRFTRKFDMQKHLQNKHPDKTSTIKPSVKSKNVEILEKCKSLSENRSYYTCDVCNSKFGKSSSLMRHRSGHFNEKPYCCHICGAKFRMSAHLTRHIDQLHHDKKRFSCMYCDLLFKSKPTRDEHLNIHTQARPFMCDVCGKAFKQKASLYVHKKFHKDVFPFSCNVCGKKYRRKSELKVHQWIHSGERPYSCDICKKSFRLGQDLKRHYRTHATYTCGECNLSFDQMKSFKAHKKLHENTKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329854;
- 90% Identity
- iTF_00329854;
- 80% Identity
- iTF_00329854;