Basic Information

Insect: Chrysolina haemoptera
Gene Symbol: -
Assembly: GCA_958298965.1
Location: OY282595.1:4187524-4191200[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00042 0.065 15.4 3.2 1 23 280 302 280 302 0.98

2 16 0.00029 0.044 16.0 5.6 1 23 308 331 308 331 0.95

3 16 2e-05 0.0031 19.6 0.2 1 23 337 359 337 359 0.98

4 16 9.7e-07 0.00015 23.7 0.8 1 23 365 387 365 387 0.98

5 16 0.00014 0.021 16.9 0.8 1 23 393 415 393 415 0.98

6 16 7.2e-06 0.0011 21.0 1.6 1 23 421 443 421 443 0.98

7 16 0.00038 0.058 15.6 1.8 1 23 449 472 449 472 0.93

8 16 6.8e-05 0.01 17.9 2.1 2 23 538 560 537 560 0.95

9 16 0.00031 0.047 15.9 5.9 1 23 578 601 578 601 0.96

10 16 0.00072 0.11 14.7 1.0 1 23 633 655 633 655 0.96

11 16 0.00073 0.11 14.7 6.4 1 23 661 684 661 685 0.94

12 16 0.24 37 6.8 0.6 1 23 690 712 690 712 0.96

13 16 1.5e-05 0.0022 20.0 1.0 1 23 718 740 718 740 0.96

14 16 4.7e-06 0.00072 21.6 0.9 1 20 746 765 746 768 0.94

15 16 1.5e-05 0.0022 20.0 2.1 1 23 774 796 774 796 0.99

16 16 0.001 0.15 14.2 1.5 1 23 799 821 799 821 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00042	0.065	15.4	3.2	1	23	280	302	280	302	0.98
2	16	0.00029	0.044	16.0	5.6	1	23	308	331	308	331	0.95
3	16	2e-05	0.0031	19.6	0.2	1	23	337	359	337	359	0.98
4	16	9.7e-07	0.00015	23.7	0.8	1	23	365	387	365	387	0.98
5	16	0.00014	0.021	16.9	0.8	1	23	393	415	393	415	0.98
6	16	7.2e-06	0.0011	21.0	1.6	1	23	421	443	421	443	0.98
7	16	0.00038	0.058	15.6	1.8	1	23	449	472	449	472	0.93
8	16	6.8e-05	0.01	17.9	2.1	2	23	538	560	537	560	0.95
9	16	0.00031	0.047	15.9	5.9	1	23	578	601	578	601	0.96
10	16	0.00072	0.11	14.7	1.0	1	23	633	655	633	655	0.96
11	16	0.00073	0.11	14.7	6.4	1	23	661	684	661	685	0.94
12	16	0.24	37	6.8	0.6	1	23	690	712	690	712	0.96
13	16	1.5e-05	0.0022	20.0	1.0	1	23	718	740	718	740	0.96
14	16	4.7e-06	0.00072	21.6	0.9	1	20	746	765	746	768	0.94
15	16	1.5e-05	0.0022	20.0	2.1	1	23	774	796	774	796	0.99
16	16	0.001	0.15	14.2	1.5	1	23	799	821	799	821	0.98

Sequence Information

Coding Sequence: ATGGAAGAAAACAAAGAATCCCTAATGGAGCCATCCGAAGAAAACGCAATTACAGAAATCATCAGCATAAATGTAATTTGTAGATTGTGTGCCAATCAAAACGATAAACTAATTGGAATATTTAGCGAAAACGGTCTTAGTAACGATTTAGCATCGAAAATGAACCTGTATCTTCCTGTAAAAGTATATGAAACGGATGAATTACCCCTTCAGTGCTGCTGGCAGTGCGCCTCTACAGTTTTAGCTTGGCACGATTTGTTTTTAACTAGCCTAGAAGCTGACCGAAGGCTGAGGAGCTACCAATTTGTATCCGAGAGGCAACTGAAGAGCGTTGAGAGTTACGTTGAGACTGATACACACCAACAACAACAAGAGGATGAACCTGAAGGAACTAAACACAATGTTCTCGTCAAAAATGAATCAGAACAAATCGTAAAACCTGAAGTAGCAGAATACGAGACGAGCAATGAAAGCTTGACTGATTTAGTCACCTTGGAACCCCGTTATTTGCAACTCAGCCCAGTTGTATATGAAATGGAGAAAGAGAAAACTGACGAGACAGATACAGTAAATTCAAAGCCAGAAGAAATTGACCAAATATTCGAAGGAGAACCAGAACATTTGGAAGAAAAGGAGACCACTTGTTACGGATGTCAGACTTGCCAAATGGTGTTTCTCAATGAACAAGAGATGGTCGTTCACCTTTCGGAGGTTCATCCTGAGGAGGACTTCAAACCAAACACACCGAAAAATAACAAGAAAGACAAAAGGAAAAACACGAAAATCGACCAGGACCTCGTCAATTCCGCCAAAATAATCGTAGACGGTAAAATCTACTACAACTGTAAAGAGTGTGGCAGGTGTCTCCATTCACCTTACACCTACGTGTGGCACATGCGCATACACACAGGAGAACGTCCCCACACATGTCACCTGTGCGGCAAGTGCTTCCGAGTGTCCCAAGGCCTGGTGCGACATTTGAAAGAAACCCACCAGGGCATCAAGAACTTCCCCTGTGACCTATGCGGAAGAATGTTCGCGACGCGGCGCAACGTGGAGGAGCATCGCAGGATCCACACCAACGAGCGCCCTTATGTCTGTGACCTGTGCGGGAAGTCGTTCAAACAGAAGGCGTCTTTGTTTGTGCATAATCGCTCACACACCGACTCTTTTCCATTCAAGTGTTCGTATTGTGAGCAGATGTTCAGGACTAAGCCTCCTTTGATGATACATATCACGAAACACACTGGGGAGAAGCCCTACCCTTGCGACATATGTGGTAGGCATTTCCGAATCAAGTATGAGCTGAAGAGGCATAGGCTCATTCATTCTGATGAAAAACCTTTTGCTTGTGTTATGTGCGGGTTGAGCTTCAAACAGAAAAGATATCTGAagaatcataacaagcaaaatCATAGTACGCTTGATTTGGCAACAGATACCGTACAATATGAAGAGGAATACCATCAAGAAAGCAGCCATTTTCCTAACACTGATCCGGTCTCTACAGACGCAGAAAACCCGAATATCACCAACACAGAACCCGAAGAAGAGCAAGAAACAGCCGATAACATCTCCGAATATCTTCGAGCAGTCGACTTACTATCAAAAACGTGCAAACTCTGCGAACGGCCTTTCACCAACAAGACCGAACTGAAAAACCACATGTTCTCCTCGCATAACCTCAAACAGCCGAAATTCCGTCGAAAAAAGACCGAAATCGACGCGCTTTTCTGCTGTCCGGAATGCAGGAAGCGATTCACGAGAAAATTCGACATGCAAAAACACTTACAGAACAAACACCCCGACAAAACCAGCACCATAAAACCTTCGGTCAAATCGAAAAACGTGGAAATACTGGAAAAATGCAAATCCCTCAGCGAGAATCGGTCTTACTATACCTGCGACGTCTGCAACAGCAAGTTCGGCAAGAGCAGCAGCTTGATGCGACATAGGAGCGGGCATTTCAACGAAAAGCCTTACTGCTGCCACATCTGCGGCGCGAAGTTTCGAATGTCAGCGCACCTCACCAGGCACATCGACCAACTGCACCATGACAAGAAAAGATTCAGCTGCATGTACTGCGACCTGTTGTTCAAGAGCAAGCCCACCAGAGACGAGCACTTGAACATACACACCCAGGCCAGGCCGTTCATGTGCGACGTTTGCGGCAAGGCGTTCAAGCAGAAAGCGTCGCTGTACGTGCACAAGAAGTTCCACAAGGACGTTTTTCCTTTTTCGTGCAACGTCTGCGGAAAGAAGTACCGGAGGAAAAGCGAGCTGAAAGTGCACCAGTGGATACACAGCGGGGAGAGACCTTACAGCTGTGACATCTGCAAGAAGTCGTTTAGATTGGGGCAGGATTTGAAGAGGCATTACAGGACGCATGCTACATATACCTGCGGCGAATGCAATTTGAGTTTTGATCAGATGAAGTCGTTCAAGGCGCACAAGAAATTGCACGAGAACACAAAACGTTAG
Protein Sequence: MEENKESLMEPSEENAITEIISINVICRLCANQNDKLIGIFSENGLSNDLASKMNLYLPVKVYETDELPLQCCWQCASTVLAWHDLFLTSLEADRRLRSYQFVSERQLKSVESYVETDTHQQQQEDEPEGTKHNVLVKNESEQIVKPEVAEYETSNESLTDLVTLEPRYLQLSPVVYEMEKEKTDETDTVNSKPEEIDQIFEGEPEHLEEKETTCYGCQTCQMVFLNEQEMVVHLSEVHPEEDFKPNTPKNNKKDKRKNTKIDQDLVNSAKIIVDGKIYYNCKECGRCLHSPYTYVWHMRIHTGERPHTCHLCGKCFRVSQGLVRHLKETHQGIKNFPCDLCGRMFATRRNVEEHRRIHTNERPYVCDLCGKSFKQKASLFVHNRSHTDSFPFKCSYCEQMFRTKPPLMIHITKHTGEKPYPCDICGRHFRIKYELKRHRLIHSDEKPFACVMCGLSFKQKRYLKNHNKQNHSTLDLATDTVQYEEEYHQESSHFPNTDPVSTDAENPNITNTEPEEEQETADNISEYLRAVDLLSKTCKLCERPFTNKTELKNHMFSSHNLKQPKFRRKKTEIDALFCCPECRKRFTRKFDMQKHLQNKHPDKTSTIKPSVKSKNVEILEKCKSLSENRSYYTCDVCNSKFGKSSSLMRHRSGHFNEKPYCCHICGAKFRMSAHLTRHIDQLHHDKKRFSCMYCDLLFKSKPTRDEHLNIHTQARPFMCDVCGKAFKQKASLYVHKKFHKDVFPFSCNVCGKKYRRKSELKVHQWIHSGERPYSCDICKKSFRLGQDLKRHYRTHATYTCGECNLSFDQMKSFKAHKKLHENTKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00330223;
90% Identity: iTF_00330223;
80% Identity: iTF_00330223;