Basic Information

Insect: Chrysolina haemoptera
Gene Symbol: -
Assembly: GCA_958298965.1
Location: OY282585.1:48856384-48865762[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.011 1.7 10.9 0.1 2 20 222 240 221 242 0.93

2 10 0.0048 0.74 12.1 1.1 1 23 256 278 256 278 0.97

3 10 6.9e-05 0.011 17.9 1.0 3 23 325 346 323 346 0.91

4 10 2.2 3.4e+02 3.7 0.2 1 19 406 424 406 427 0.78

5 10 5.7e-06 0.00088 21.3 4.4 1 23 456 478 456 478 0.98

6 10 7.7e-06 0.0012 20.9 1.3 1 23 484 506 484 506 0.98

7 10 6.5e-07 9.9e-05 24.3 1.7 1 23 512 535 512 535 0.96

8 10 1.4e-07 2.2e-05 26.3 0.7 1 23 541 563 541 563 0.99

9 10 1.2e-06 0.00018 23.5 2.0 1 23 569 591 569 591 0.99

10 10 1.2e-06 0.00019 23.4 1.8 1 23 597 619 597 619 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.011	1.7	10.9	0.1	2	20	222	240	221	242	0.93
2	10	0.0048	0.74	12.1	1.1	1	23	256	278	256	278	0.97
3	10	6.9e-05	0.011	17.9	1.0	3	23	325	346	323	346	0.91
4	10	2.2	3.4e+02	3.7	0.2	1	19	406	424	406	427	0.78
5	10	5.7e-06	0.00088	21.3	4.4	1	23	456	478	456	478	0.98
6	10	7.7e-06	0.0012	20.9	1.3	1	23	484	506	484	506	0.98
7	10	6.5e-07	9.9e-05	24.3	1.7	1	23	512	535	512	535	0.96
8	10	1.4e-07	2.2e-05	26.3	0.7	1	23	541	563	541	563	0.99
9	10	1.2e-06	0.00018	23.5	2.0	1	23	569	591	569	591	0.99
10	10	1.2e-06	0.00019	23.4	1.8	1	23	597	619	597	619	0.97

Sequence Information

Coding Sequence: ATGGAGAATAATAAACCTACTGGCGATGAGGAAGTCCTGGAAAATACTGTAATCGAAGATAATTCCGGTTCACCTCAATATATGATACACAGAGTTCCTGACAATGCACAACTCTTAAGTACAGAGTTGTTGCAACAGCAACATGGAATTGTTGTGGATTTGGGAGGCAATGATTTCATCCCAGTTAGTTATTCCTCTGAAGATCTGCTATCACAAGATTTAACCGAGGAAGACAGAAATTTAGCTGCAGCTCTGGTAGCAGTACAGCTAAGTCAACAACAGAAACAGCAGCAAATTCAAGATACTGCCCTACCCTCACTTGTTGCAACCTCAAATTTAGGTGCGAAGCTTCTGGAAGATCAACCTCTTATAATCAGTGAGAAGTCAGGTGGAACAAGTTATTTGCGTATCATCAATTCTGATAACATATATGTTGAACAGCAATCATTACCGAAGTTAGTTGACAGTGTCAGATATGCCACTGTGgctgaaaatttttctgaaGAAATACCGAAAATACCCATCAAAAAAGAAGATGACAGAGCTGATTCAGATGGAGAATCCTATAGaaacgaACAACGTAATGCTAAAAAGAGCTTGCCACATAAGAAACGAATATCAAGGAAGTTGAAGAAAACCACAAGTACCTCTCCTAAAAAGGTTGTATGCAATTTATGTGAACAGTCGTTCAATTCCAACGACGAATTCGCACAGCACGAGCTTTTGTGTCAAACTACCATCACTCCTGTCAATCAAGTTAACACCTTCGCCTGTCAAATTTGTAATCAACCATTTACAGAACAGCTCAAGTTTTTCGAGCATCTGAAGAAGCATTATGAACCTGGTGGGGGAGGTCTTCCGACTTCTCCTCCGAAACCCACTCCAGAAAAGAAAACTGTTACTCCTGAAAAAGCTGACACAGGAGAAAATGAACGGCAGGAGAGCTTACTTTCGAGTCTGCTGAATTTGACATGTATCGAATGTAACAAAACTTTCAGGAGGCAGAAAACATTTGAAGCTCACATGAGAGACATACACACTAGTAAAAATGAACCTCTTGATGAATTTAGCGAACCTGAGGATTTAATGGAAGGTATTAACGTTGTGGTGGATACAAATGAACcacatgatgatgatgattctAAAGCTTGGTATCGAGAAGAAGAGCTACATCAAACTGAAGAAGATTTAAAAGAACTAGAAGCTGGCAATGATCATATATGCCATTTTTGTAATCAACCTTTCCCTCTGAGGGCAATATTATTGCAACATCTTGTCACTTGTAGGGCAACTACTGGAAATACagAATCCGCTCCTCTGGCAGTTGTTAAAAAGATAAACAAGAAGAATAAGAAGAAATCAACCCATGAATGCACTGAATGCGATAGGGTCTTCACCCATAAAAACTCTCTTGTTTATCATATGAGGAGTCACACAGGTATTAGACCCCACCAGTGTGATCAATGTGGAAAGAGTTTCTTCGCATCAAGCGCTTTGAAGGTTCATCTGCGTCTTCACTCCGGTGACAAGCCGTACAGCTGCGAGCACTGTGGCAAAAGGTTCCGCCAGTGGGGTGACTTGAAATATCACATAACCTCTTTGCATTCGACAGAAAAGAATTTCCAGTGCGAATATTGCGGCAAAGAGTTCGCCAGGAAGTATTCTTTGGTTGTCCATCGCAGAATACATACAGGTGAACGCAACTACAAATGCGAGTTCTGCGGCAAATCGTTCCGCGCCTCCTCCTACCTGCAGAACCACCGCAAAATCCACACGGGCGAAAAGCCGCACATGTGCGGCGTGTGCGGCAAACCTTTCCGCGTGCGCTCGGACATGAAGCGCCACCAGCGGACGCACAACAAAGGTCCGGGCGGCGCGAAGGCGTCGCGCTCGCTGTCCAAGGTCGAGAAACAGGAGGTCGTCGAAGAGGAGGAGCTGAGCAGCGAGCTGCACATCGAGGACGAAGAGGCGGCCGGGCAGCTGTTCACGGAGTATACGACGCAGGAGATTGATGGGGAAAGGACAGTTCGGGTGCCCAACAGGAATCTgtaTATTAATGGTCACGAATTGTTCTTAGTTACTTATCCTAATGAAATAAGGGCTGGAGAATCACAAACTGCTTCTGCATGGGTTCACACTTcaaactcataa
Protein Sequence: MENNKPTGDEEVLENTVIEDNSGSPQYMIHRVPDNAQLLSTELLQQQHGIVVDLGGNDFIPVSYSSEDLLSQDLTEEDRNLAAALVAVQLSQQQKQQQIQDTALPSLVATSNLGAKLLEDQPLIISEKSGGTSYLRIINSDNIYVEQQSLPKLVDSVRYATVAENFSEEIPKIPIKKEDDRADSDGESYRNEQRNAKKSLPHKKRISRKLKKTTSTSPKKVVCNLCEQSFNSNDEFAQHELLCQTTITPVNQVNTFACQICNQPFTEQLKFFEHLKKHYEPGGGGLPTSPPKPTPEKKTVTPEKADTGENERQESLLSSLLNLTCIECNKTFRRQKTFEAHMRDIHTSKNEPLDEFSEPEDLMEGINVVVDTNEPHDDDDSKAWYREEELHQTEEDLKELEAGNDHICHFCNQPFPLRAILLQHLVTCRATTGNTESAPLAVVKKINKKNKKKSTHECTECDRVFTHKNSLVYHMRSHTGIRPHQCDQCGKSFFASSALKVHLRLHSGDKPYSCEHCGKRFRQWGDLKYHITSLHSTEKNFQCEYCGKEFARKYSLVVHRRIHTGERNYKCEFCGKSFRASSYLQNHRKIHTGEKPHMCGVCGKPFRVRSDMKRHQRTHNKGPGGAKASRSLSKVEKQEVVEEEELSSELHIEDEEAAGQLFTEYTTQEIDGERTVRVPNRNLYINGHELFLVTYPNEIRAGESQTASAWVHTSNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00328507; iTF_00057031; iTF_00387468; iTF_00736046; iTF_00792400; iTF_01047668; iTF_00026293; iTF_00755993; iTF_00459182; iTF_00740242; iTF_00330947; iTF_00912444; iTF_00911319; iTF_01106620;
90% Identity: iTF_00328507;
80% Identity: -