Basic Information

Insect: Lochmaea crataegi
Gene Symbol: -
Assembly: GCA_947563755.1
Location: OX387431.1:6021020-6024210[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0023 0.53 12.4 0.0 2 20 224 242 223 244 0.92

2 10 0.0026 0.6 12.2 1.4 1 23 258 280 258 280 0.98

3 10 4e-05 0.0094 17.9 1.0 3 23 329 350 327 350 0.91

4 10 1.1 2.5e+02 4.0 0.1 1 19 411 429 411 432 0.78

5 10 2.4e-06 0.00057 21.7 4.2 1 23 461 483 461 483 0.98

6 10 4.5e-06 0.001 20.9 1.3 1 23 489 511 489 511 0.98

7 10 3.8e-07 8.8e-05 24.3 1.7 1 23 517 540 517 540 0.96

8 10 8.4e-08 2e-05 26.3 0.7 1 23 546 568 546 568 0.99

9 10 6.8e-07 0.00016 23.5 2.0 1 23 574 596 574 596 0.99

10 10 1.7e-06 0.00041 22.2 1.9 1 23 602 624 602 624 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0023	0.53	12.4	0.0	2	20	224	242	223	244	0.92
2	10	0.0026	0.6	12.2	1.4	1	23	258	280	258	280	0.98
3	10	4e-05	0.0094	17.9	1.0	3	23	329	350	327	350	0.91
4	10	1.1	2.5e+02	4.0	0.1	1	19	411	429	411	432	0.78
5	10	2.4e-06	0.00057	21.7	4.2	1	23	461	483	461	483	0.98
6	10	4.5e-06	0.001	20.9	1.3	1	23	489	511	489	511	0.98
7	10	3.8e-07	8.8e-05	24.3	1.7	1	23	517	540	517	540	0.96
8	10	8.4e-08	2e-05	26.3	0.7	1	23	546	568	546	568	0.99
9	10	6.8e-07	0.00016	23.5	2.0	1	23	574	596	574	596	0.99
10	10	1.7e-06	0.00041	22.2	1.9	1	23	602	624	602	624	0.97

Sequence Information

Coding Sequence: ATGGAAAGTAAAGCTAATCAGGAAACACTGGAAAATATTGTAATTGGAGATGGAACGAGCCCACAGTATATGATTCAGAGAGTTCCAGAAAATGCGCAACTTCTAACTACTGAACTTTTACAACAACAACATGGATTAGTTGTAGATTTAGGTGGAAATGATTTTATTCCAGTGAGTTACGCATCCGAAGATTTACTTTCTCAAGATCTTACTGAAGAAGACAGAAATTTGGCTGCTGCTTTAGTAGCAGTTCAACTCAGCCAACAACAAAAACAACAACAGTTGCAAGATACCACTTTGCCATCTTTAGTTACAACATCCAACCTAGGAACAAAAATTCTAGATGAACCACAACTAATTATCAGTAGTGAAAAAGGAGGAGGAACCAGCTTTTTGAGAATTGTTAATTCAGATAATATTTATGTAGAGCAACAACCTCTCCCGAAATTGGTTGATACTGTTAGATTTACAACTGTAAACAGTGTTGGTCAAACATATGCCGAAGAAGTAGAAATAGAAAAATGTCCCACAAAGAAAGAAGAGGAAAAAGCAGATTCAGACAGAGAATCTTTAAAAAATGAACCCCGTACCTCAAAAAAGAGCTTGCCTCACAAAAAGCGGATCTCGAGAAAACTTAAAAAAAATTCTGTGGCATCTGTCAAAAAAATAGTCTGTAATTTATGTGAACAATCATTCAGCTCTAATGATGAATTCGCTCAACATGAAATGTTATGTCAAACAACAATTACACCTGTCAACCAAGTCAATGCATTTAATTGTCAAATCTGTAATGAACCTTTTACCGAACAACTAAAGTTTTTTGAACATTTGAAAAAACATTACGAGCCGGGTGGAGGAGGTTTGCCCACGAGTCCCCCAAAAAGTTCCACATCACTAGAAAAGAAAACTTCGCCAGAAAAAACTACCGAACCAAGTGAAAATGAACGACAAGAAAGTTTGCTATCCAGTTTACTTAATTTAACGTGTATCGAATGTAACAAAACATTCAGAAGACAAAAAACGTTTGAAGCACATATGAGAGATATACACACAAGCAAAAATGAACCTTTGGATGAATTTAGTGAACCCGAAGATCTCATGGAAGGCATCACTATGGTGGTCGACACTAACGAGCCAGAACCTGATGAAGACGATTCAAAGGCATGGTACAGAGAAGAAGAGATTCATCAGACTGAAGAAGATTTGAAAGAGCTTGAATCCGGTAGCGAACATATTTGTCATTTATGCAATCAACCGTTTCCTCTTAGGGCCATTTTACTTCAACATTTGGTTACTTGCAGATCCACAACTGGCAATACAGAATCAGCACCGCTGGCTATCGTTAAAAAAATCAATAAGAAAAATAAGAAAAAAGCAACACATGAATGTAACGaatgcgatagagttttcacacataaaaattctttggtgtaccacatgagaagtcactcgggaataagacctcaccaatgtgaccaatgtggaaaaagtttcttcgcttctagtgctctcaagGTTCACCTAcgtcttcattcaggggataaaccatatagttgcgaacactgtggaaaaagatttagacaatggggcgaccttaagtatcacataacgtcgttgcactcgaccgaaaagaacttccaatgcgaatattgcggcaaggaattcgcgagaaagtattctctagttgtacataggagaattcatacaggcgaacgaaactacaaatgtgaattttgtggcaagtcattccgagcttcttcgtatttgcaaaatcatcgaaaaatccataccggtgaaaaaccgcacatgtgcggagtatgtgggaaaccgttccgcgtaagatccgacatgaaaagacacCAAAAAACTCACTCTAAAGGTCCGACGACGAACACCAAAACTTTGCGGCCTATTTCGAAGATAGAAAAGGTAGAAATAATCGAAGAGGAAGAATTGAGTAGTGAATTGCATATTGAAGATGAAGAGGCTGCAGGGCAGTTACTTACTGAATACACACAAGAAGAATTAGACGATGAAAGAACAGTAAGGGTGCCAAACAGGAATCTATATATCAATGGACACGAACTATTCCTAGTGACATACCCGAATGAAATCCGAGCGGGAGAACCACAAACGTCTACTGCCGCTTGGGTGCACGCGCCTAATGCTTAA
Protein Sequence: MESKANQETLENIVIGDGTSPQYMIQRVPENAQLLTTELLQQQHGLVVDLGGNDFIPVSYASEDLLSQDLTEEDRNLAAALVAVQLSQQQKQQQLQDTTLPSLVTTSNLGTKILDEPQLIISSEKGGGTSFLRIVNSDNIYVEQQPLPKLVDTVRFTTVNSVGQTYAEEVEIEKCPTKKEEEKADSDRESLKNEPRTSKKSLPHKKRISRKLKKNSVASVKKIVCNLCEQSFSSNDEFAQHEMLCQTTITPVNQVNAFNCQICNEPFTEQLKFFEHLKKHYEPGGGGLPTSPPKSSTSLEKKTSPEKTTEPSENERQESLLSSLLNLTCIECNKTFRRQKTFEAHMRDIHTSKNEPLDEFSEPEDLMEGITMVVDTNEPEPDEDDSKAWYREEEIHQTEEDLKELESGSEHICHLCNQPFPLRAILLQHLVTCRSTTGNTESAPLAIVKKINKKNKKKATHECNECDRVFTHKNSLVYHMRSHSGIRPHQCDQCGKSFFASSALKVHLRLHSGDKPYSCEHCGKRFRQWGDLKYHITSLHSTEKNFQCEYCGKEFARKYSLVVHRRIHTGERNYKCEFCGKSFRASSYLQNHRKIHTGEKPHMCGVCGKPFRVRSDMKRHQKTHSKGPTTNTKTLRPISKIEKVEIIEEEELSSELHIEDEEAAGQLLTEYTQEELDDERTVRVPNRNLYINGHELFLVTYPNEIRAGEPQTSTAAWVHAPNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00329913;
90% Identity: iTF_00459182;
80% Identity: -