Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293418.1:7138845-7146014[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.017 2.9 10.5 0.1 3 20 223 240 221 242 0.92

2 10 0.0063 1.1 11.8 1.8 1 23 256 278 256 278 0.98

3 10 7.2e-05 0.012 17.9 1.0 3 23 325 346 323 346 0.91

4 10 2.3 4e+02 3.7 0.2 1 19 407 425 407 428 0.78

5 10 6e-06 0.001 21.3 4.4 1 23 457 479 457 479 0.98

6 10 8e-06 0.0014 20.9 1.3 1 23 485 507 485 507 0.98

7 10 6.7e-07 0.00012 24.3 1.7 1 23 513 536 513 536 0.96

8 10 1.5e-07 2.6e-05 26.3 0.7 1 23 542 564 542 564 0.99

9 10 1.2e-06 0.00021 23.5 2.0 1 23 570 592 570 592 0.99

10 10 1.6e-05 0.0028 19.9 2.5 1 23 598 620 598 620 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.017	2.9	10.5	0.1	3	20	223	240	221	242	0.92
2	10	0.0063	1.1	11.8	1.8	1	23	256	278	256	278	0.98
3	10	7.2e-05	0.012	17.9	1.0	3	23	325	346	323	346	0.91
4	10	2.3	4e+02	3.7	0.2	1	19	407	425	407	428	0.78
5	10	6e-06	0.001	21.3	4.4	1	23	457	479	457	479	0.98
6	10	8e-06	0.0014	20.9	1.3	1	23	485	507	485	507	0.98
7	10	6.7e-07	0.00012	24.3	1.7	1	23	513	536	513	536	0.96
8	10	1.5e-07	2.6e-05	26.3	0.7	1	23	542	564	542	564	0.99
9	10	1.2e-06	0.00021	23.5	2.0	1	23	570	592	570	592	0.99
10	10	1.6e-05	0.0028	19.9	2.5	1	23	598	620	598	620	0.97

Sequence Information

Coding Sequence: ATGGCGAATAATAAATCTACTGGCGATGAAGAATCCTTGGAAAATGCAGTTATTGAAGATAATTCCGGTTCACCTCAATATATGATACACAGAGTTCCTGACAATGCCCAACTCTTGAGTACAGAGTTATtgcagcagcaacatggaattGTTGTGGATTTGGGAGGAAATGATTTCATTCCAGTCAGTTATTCCTCTGATGATCTGCTATCACAAGATTTAACTGAGGAGGACAGAAATTTAGCTGCAGCTCTAGTTGCAGTACAGCTCAGTCAACAACAGAAACAGCAGCAAATTCAAGACACTGCTTTACCCTCACTTGTTGCAGCATCAAATTTAGGTGCAAAGATTCTGGAAGATCAACCTCTTATAATCAGTGAAAAATCAGGTGGCACAAGTTATTTGCGTATCATCAACTCTGATAACATATATGTTGAACAGCAATCTTTACCCAAGCTAGTTGACAGTGTCAGATATGCTACTGTGGCTGAAaatttttctgaagaaatacATAAAATACCCATCAAAAAAGAAGATGATAGAGGTGATTCGGATGGAGAGTCCTTTAGAAATGAACAACGTAATTCTAAAAAGAGCTTGCCACACAAGAAACGAATATCAAGGAAGTTGAAGAAAACCACTAGTACCTCTCCTAGGAAGGTTATATGTAATTTATGTGAACAGTCGTTCAATTCCAACGATGAGTTCGCACAGCATGAGCTTTTGTGTCAAACTACCATCACTCCTGTCAATCAAGCCAACACTTTCAACTGTCAAATTTGTAATCAACCATTCACAGAACAGCTCAAGTTTTTCGAGCATCTGAAGAAGCATTATGAACCTGGTGGGGGAGGTCTCCCGACTTCTCCTCCAAAACCCTCTCCGGAAAAGAAACCTGTCACCCCTGAAAAAGCCGACACAGGAGAAAATGAACGCCAGGAAAGCTTGCTTTCGAGTCTACTGAATTTGACTTGTATTGAATGTAACAAGACTTTCAGGAGGCAAAAAACGTTTGAGGCTCATATGAGAGACATCCACACTAGTAAAAATGAACCTCTTGATGAATTCAGCGAACCTGAGGACTTAATGGAAGGAATTAACGTTGTGGTAGATACAAATGAACCACATGATGATGAAGATGATTCTAAGGCTTGGTATCGAGAAGAAGAGCTGCATCAAACTGAAGAAGATTTGAAAGAACTGGAAGCTGGCAACGATCATATTTGTCATTTTTGTAATCAACCTTTCCCTTTGAGGGCAATATTATTGCAACATCTTGTCACTTGTAGAGCAACCACGGGAAATACAGAATCGGCTCCTCTGGCagttgttaaaaaaataaacaagaagAATAAGAAGAAATCAACCCACGAATGCACTGAATGTGACAGGGTCTTCACCCATAAAAACTCTCTCGTATACCACATGAGAAGCCACACGGGTATTCGACCTCACCAGTGTGATCAGTGTGGTAAGAGTTTCTTCGCATCTAGCGCTCTGAAGGTCCATCTGCGTCTTCACTCCGGTGACAAGCCGTACAGCTGCGAGCACTGCGGCAAAAGGTTCCGCCAATGGGGTGACTTGAAATATCACATAACCTCATTgcattcaacagaaaagaatTTCCAGTGCGAATATTGCGGCAAAGAATTCGCCAGAAAATATTCTTTGGTTGTCCATCGCAGAATACATACAGGTGAACGCAACTACAAGTGCGAGTTCTGCGGCAAATCTTTCCGCGCCTCCTCCTACCTCCAAAACCACCGCAAGATCCACACGGGCGAAAAGCCGCACATGTGCGGCGTGTGTAGCAAACCGTTCCGCGTCCGATCGGACATGAAGCGCCACCAGCGGACGCACAACAAAGGTCCTGGAGGCGCCAAAGCGTCGCGCTCGCTGTCCAAGGTCGAGAAGCAGGAGGTCGTCGAAGAGGAGGAGCTGAGCAGCGAATTGCACATCGAGGACGAAGAGGCTGCTGGACAACTTTTTACGGAATACACGACGCAAGAGATTGATGGAGAAAGGACGGTTCGAGTGCCCAACAGGAATCTGTATATTAACGGTCATGAACTGTTCTTAGTAACTTATCCTAATGAAATAAGAGCTGGAGAATCACAAACTGCTTCTGCGTGGGTTCATACTTCtaactcataa
Protein Sequence: MANNKSTGDEESLENAVIEDNSGSPQYMIHRVPDNAQLLSTELLQQQHGIVVDLGGNDFIPVSYSSDDLLSQDLTEEDRNLAAALVAVQLSQQQKQQQIQDTALPSLVAASNLGAKILEDQPLIISEKSGGTSYLRIINSDNIYVEQQSLPKLVDSVRYATVAENFSEEIHKIPIKKEDDRGDSDGESFRNEQRNSKKSLPHKKRISRKLKKTTSTSPRKVICNLCEQSFNSNDEFAQHELLCQTTITPVNQANTFNCQICNQPFTEQLKFFEHLKKHYEPGGGGLPTSPPKPSPEKKPVTPEKADTGENERQESLLSSLLNLTCIECNKTFRRQKTFEAHMRDIHTSKNEPLDEFSEPEDLMEGINVVVDTNEPHDDEDDSKAWYREEELHQTEEDLKELEAGNDHICHFCNQPFPLRAILLQHLVTCRATTGNTESAPLAVVKKINKKNKKKSTHECTECDRVFTHKNSLVYHMRSHTGIRPHQCDQCGKSFFASSALKVHLRLHSGDKPYSCEHCGKRFRQWGDLKYHITSLHSTEKNFQCEYCGKEFARKYSLVVHRRIHTGERNYKCEFCGKSFRASSYLQNHRKIHTGEKPHMCGVCSKPFRVRSDMKRHQRTHNKGPGGAKASRSLSKVEKQEVVEEEELSSELHIEDEEAAGQLFTEYTTQEIDGERTVRVPNRNLYINGHELFLVTYPNEIRAGESQTASAWVHTSNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00329913;
90% Identity: iTF_00329913;
80% Identity: -