Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293411.1:106966027-106969340[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0014 0.24 13.9 1.3 2 23 52 73 51 73 0.97

2 17 0.13 23 7.6 3.4 1 23 77 99 77 99 0.98

3 17 0.034 5.8 9.5 3.7 1 23 105 127 105 127 0.99

4 17 9.9e-06 0.0017 20.6 0.2 1 23 133 155 133 155 0.95

5 17 5.4e-06 0.00094 21.4 0.2 1 23 161 184 161 184 0.98

6 17 4.9e-05 0.0084 18.4 2.6 1 23 190 212 190 212 0.97

7 17 1.2 2.1e+02 4.6 0.6 2 23 219 240 218 240 0.94

8 17 3 5.1e+02 3.4 2.2 3 23 249 269 248 270 0.87

9 17 0.0083 1.4 11.4 0.4 2 23 273 294 273 294 0.97

10 17 1.2e-06 0.0002 23.5 0.5 1 23 303 325 303 325 0.98

11 17 1.5e-06 0.00026 23.2 1.3 1 23 332 354 332 354 0.98

12 17 4.8e-05 0.0083 18.5 1.8 1 20 360 379 360 382 0.93

13 17 0.00079 0.14 14.6 4.4 1 23 388 410 388 410 0.97

14 17 5.8e-06 0.001 21.3 0.7 1 23 416 438 416 438 0.98

15 17 2.7 4.7e+02 3.5 3.1 2 19 444 461 444 463 0.91

16 17 0.0023 0.4 13.1 2.9 2 23 475 496 475 496 0.97

17 17 0.16 28 7.4 0.3 1 23 502 524 502 524 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0014	0.24	13.9	1.3	2	23	52	73	51	73	0.97
2	17	0.13	23	7.6	3.4	1	23	77	99	77	99	0.98
3	17	0.034	5.8	9.5	3.7	1	23	105	127	105	127	0.99
4	17	9.9e-06	0.0017	20.6	0.2	1	23	133	155	133	155	0.95
5	17	5.4e-06	0.00094	21.4	0.2	1	23	161	184	161	184	0.98
6	17	4.9e-05	0.0084	18.4	2.6	1	23	190	212	190	212	0.97
7	17	1.2	2.1e+02	4.6	0.6	2	23	219	240	218	240	0.94
8	17	3	5.1e+02	3.4	2.2	3	23	249	269	248	270	0.87
9	17	0.0083	1.4	11.4	0.4	2	23	273	294	273	294	0.97
10	17	1.2e-06	0.0002	23.5	0.5	1	23	303	325	303	325	0.98
11	17	1.5e-06	0.00026	23.2	1.3	1	23	332	354	332	354	0.98
12	17	4.8e-05	0.0083	18.5	1.8	1	20	360	379	360	382	0.93
13	17	0.00079	0.14	14.6	4.4	1	23	388	410	388	410	0.97
14	17	5.8e-06	0.001	21.3	0.7	1	23	416	438	416	438	0.98
15	17	2.7	4.7e+02	3.5	3.1	2	19	444	461	444	463	0.91
16	17	0.0023	0.4	13.1	2.9	2	23	475	496	475	496	0.97
17	17	0.16	28	7.4	0.3	1	23	502	524	502	524	0.97

Sequence Information

Coding Sequence: ATGGATTCTATTATGCATCCTCCTGAACAAGTCCTCATTAAACAAGAACCCCTAGACGAGTCCGATTTCAGCAACTGGAATGAAAGCACTCCTTGCGACAAGCTTCTCAAAGTTGAAATACTTGAGCCAGATAGCACCAACATAGAAAATATGACATGTAGGGAATGTGAGACGTTGTTTGTCAACGAACATGAGCTGAAAATTCACCAAATGACACATTCACCTGACCACACTTGTTTCATCTGCAAGGAGTTTGTGAGAAACAGATTTCAGTTCGTAGGACACGTTAGAAAACACATGTGCGCTAAGCCGTTCAAATGTCATAGTTGCATCCGAACATTTCCCACTTCCAGGGAAACCAAGTTGCACCAAAGGGTGCACAGCGATGATAGGCCATATATGTGCACGGAATGTGGGAAGGCTTTCAAACAGATCTCCACCCTGAAGGACCATGAGGTGGTCCATACTGGAGAGAAGAAATTCAAGTGTAAGATTTGCGAAGGGGCCTTTGCTACAGCTACCAGCTTAAGAAGACACATTCGTGTGATGCATGAGACTGTACGGTCTTTCCGCTGCCACTTTTGCAAGGAGGGCTTCACCAGCAAACAGGCGCTGAAACAGCACATGGGGATTCACAAAGATGAAGACCCTTTGAAATGCCAGTGTTGTGGAGAGCGACTCGTGGACATTGAAGAGTTCGTGGCTCACAGAAACAAACACATCGAACTGAGGCAGTCCGGGAACTGTGAATACTGCGGTAACAAGACATTCTATTTCGAACTGAAGGAGCATATTCTGAAGATGCACCATCCAAGGTCATGCGATATCTGCAGCCTggttttttatgatgaaaagtCTATAGAAAATCACAGAAAGAGTCACCTGGAGGAACCTGTACGAGAAGAGTATATCTGCGCCATCTGCGGGAAGAAGTTTGAATTTCCTAGGTACCTGAAGGCACACATGAAACGACATGAAGACGACTACAAAAAATTCAGATGCGACCTGTGTTCAAAATCGTTTTCCTCCAAGCGCGATCTGACCGATCACCTGAACGTGCACGCCAACGTCAAAAACTACCACTGCAAAGTGTGCGACAAAGCATTCCGAACGAAGCAAAGCGTCAACAAACACATGCCCATACATTCCGAGAAGCGCCCCTTCAAGTGCACGCTGTGCGACAAGCGGTTCAAGAAGCAATCGATCCTGCGCAAACATTCCTTCACGCACACGCGACTCCGGCCGTACGTCTGCGAGCTGTGCCCCAAGAACTACAAGTCCAAAGAGAGCTTGCGAGTCCACCGGCTGACGCACCAGAAGAAGCAGAGGAAGTGCAAAGCGTGCAAGAAGATGTTCAGCTTCGCGACAGTGTACAAGAACCACAGCTGCTTCAGCTTCTGGAGGTTCAACGTCAACAATCGGAGGTGCAACTATTGCAAGCGCGCGTGCAAGACCAGTTCCACCTACGCCTACCACATACAGGGTCACTGTCGGGTGAAATCCTTCTCTTGTAGCACGTGCAGGGCTCCCTTGACGTACCCCTATCAGGTGAAACTGCACCAGATCTTGCACAGGGACGCCGGGTCGAGTAAATAG
Protein Sequence: MDSIMHPPEQVLIKQEPLDESDFSNWNESTPCDKLLKVEILEPDSTNIENMTCRECETLFVNEHELKIHQMTHSPDHTCFICKEFVRNRFQFVGHVRKHMCAKPFKCHSCIRTFPTSRETKLHQRVHSDDRPYMCTECGKAFKQISTLKDHEVVHTGEKKFKCKICEGAFATATSLRRHIRVMHETVRSFRCHFCKEGFTSKQALKQHMGIHKDEDPLKCQCCGERLVDIEEFVAHRNKHIELRQSGNCEYCGNKTFYFELKEHILKMHHPRSCDICSLVFYDEKSIENHRKSHLEEPVREEYICAICGKKFEFPRYLKAHMKRHEDDYKKFRCDLCSKSFSSKRDLTDHLNVHANVKNYHCKVCDKAFRTKQSVNKHMPIHSEKRPFKCTLCDKRFKKQSILRKHSFTHTRLRPYVCELCPKNYKSKESLRVHRLTHQKKQRKCKACKKMFSFATVYKNHSCFSFWRFNVNNRRCNYCKRACKTSSTYAYHIQGHCRVKSFSCSTCRAPLTYPYQVKLHQILHRDAGSSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00756015; iTF_00329920;
90% Identity: iTF_00329920;
80% Identity: -