Basic Information

Insect: Chrysolina haemoptera
Gene Symbol: -
Assembly: GCA_958298965.1
Location: OY282588.1:214187-220098[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00037 0.057 15.6 1.4 2 23 52 73 51 73 0.97

2 15 0.13 20 7.6 3.4 1 23 77 99 77 99 0.98

3 15 0.033 5 9.5 3.7 1 23 105 127 105 127 0.99

4 15 9.5e-06 0.0015 20.6 0.2 1 23 133 155 133 155 0.95

5 15 5.2e-06 0.0008 21.4 0.2 1 23 161 184 161 184 0.98

6 15 2e-05 0.0031 19.6 2.6 1 23 190 212 190 212 0.98

7 15 2.2 3.3e+02 3.8 2.5 3 23 249 269 248 270 0.88

8 15 0.008 1.2 11.4 0.4 2 23 273 294 273 294 0.97

9 15 2.5e-06 0.00038 22.5 0.4 1 23 303 325 303 325 0.98

10 15 7e-06 0.0011 21.0 1.1 1 23 332 354 332 354 0.98

11 15 4.2e-05 0.0064 18.6 1.5 1 20 360 379 360 382 0.93

12 15 0.0002 0.031 16.4 4.1 1 23 388 410 388 410 0.97

13 15 1.9e-05 0.0029 19.7 1.1 1 23 416 438 416 438 0.98

14 15 0.031 4.7 9.6 3.4 2 23 476 497 476 497 0.97

15 15 0.29 45 6.5 0.6 1 23 503 525 503 525 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00037	0.057	15.6	1.4	2	23	52	73	51	73	0.97
2	15	0.13	20	7.6	3.4	1	23	77	99	77	99	0.98
3	15	0.033	5	9.5	3.7	1	23	105	127	105	127	0.99
4	15	9.5e-06	0.0015	20.6	0.2	1	23	133	155	133	155	0.95
5	15	5.2e-06	0.0008	21.4	0.2	1	23	161	184	161	184	0.98
6	15	2e-05	0.0031	19.6	2.6	1	23	190	212	190	212	0.98
7	15	2.2	3.3e+02	3.8	2.5	3	23	249	269	248	270	0.88
8	15	0.008	1.2	11.4	0.4	2	23	273	294	273	294	0.97
9	15	2.5e-06	0.00038	22.5	0.4	1	23	303	325	303	325	0.98
10	15	7e-06	0.0011	21.0	1.1	1	23	332	354	332	354	0.98
11	15	4.2e-05	0.0064	18.6	1.5	1	20	360	379	360	382	0.93
12	15	0.0002	0.031	16.4	4.1	1	23	388	410	388	410	0.97
13	15	1.9e-05	0.0029	19.7	1.1	1	23	416	438	416	438	0.98
14	15	0.031	4.7	9.6	3.4	2	23	476	497	476	497	0.97
15	15	0.29	45	6.5	0.6	1	23	503	525	503	525	0.95

Sequence Information

Coding Sequence: ATGGAAACCATCACGCATCCTACTGAACAAGTTCTCATCAAACAAGAACCCTTGGACGAGCCCGATTACAGCACCTGGAATGAAAACAGTCCTTGCGACAAGCTTCTCAAAGTTGAAATCCTCGAGCCCGATAGCACCAACATCGAAAATATGACATGCAAGGAATGTGAGACGCTTTTCGTCAACGAACATGAGCTGAAGATACACCAAATGACACATTCACCAGATCACACTTGTTTCATCTGCAAGGAGTTCGTGAGAAACAGATTTCAATTCGTGGGACACGTGAGAAAACACATGTGCGCCAAGCCGTTCAAGTGCCACAGTTGTATCCGAACGTTTCCCACTTCTAGGGAAACCAAGTTGCACCAACGAGTGCACAGCGATGAGAGACCCTATATGTGCACGGAATGTGGCAAGGCGTTCAAACAGATCTCCACCCTGAAGGACCACGAGGTGGTCCATACCGGAGAAAAGAAATTCAAGTGTAAGATTTGCGAAGGGGCCTTCGCTACAGCTACCAGCCTGAGAAGACACATTCGTGTGATGCATGAGACTGTACGGTCCTTCCGTTGCCACTTTTGCAAGGAAGGCTTCACTAGCAAACAGGCTCTCAAACAGCACATGGCGATTCACAAAGATGAAGATCCTTTGAAATGCCAGTGTTGTGGAGAGAGACTTCTGGACATAGAAGAGTTCGTGGCTCACAGAAACAAACACATTCAGCTGAGGCAGTCTGGGAATTGTGAATACTGCGGTAACAAGACATTCTATTTTGAATTGAAGGAGCATATTCAGAAAATGCACCATCCGAGGTCATGTGATATCTGCAGCCTGGTTTTTTATGATGAAAAGTCTATTGAGAATCACAGAAAGAGTCATCTGGAGGAACCTGTACGAGAAGAGTATATCTGCGCCATCTGTGGAAAGAAGTTCGAATTTCCTAGGTACCTGAAGGCACATATCAAAAGACACGAAGACGACTACAAAAAATTCAGatgtgaCCTGTGTCTAAAATCATTTTCGTCGAAGCGCGATCTGACGGACCACCTGAACGTGCATGCCAACGTCAAAAACTACCACTGCAAAGTGTGCGACAAAGCATTCCGAACGCAGCAGAGCGTCAACAAACACATGCCCATACATTCCGAGAAGCGGCCCTTCAAGTGCACCATCTGCGACAAGCGCTTCAAGAAGCAGTCGATCCTGCGCAAACATTCCTTCACGCACAGCCGCCTGCGACCGTACGTCTGCGAGCTGTGCCCCAAGAACTACAAGTCCAAGGAGAGCTTGCGAGTCCACAGATTCACGcatgagaagaagaagaagaggaagtGCAAAGCGTGCAAGAAGCTGTTCAGCTTCGAGACGGTTTACAAGAACCACAGCTGCTTCAGCTTTTGGAGGTTCAGCGTTAACAATCGAAGGTGCAATTACTGCAAGCGTCTGTGCAAGACCAGTTCCACTTACGCCTACCATATACAGGGACACTGTAGGGTGAAATCGTTCTCTTGTAGCACTTGCAAGGTTCCTTTGAAGTACCCGTATCAAGTGAAATTGCATAAAATCTTGCACAAGGACAAAGAGTCAAGTAAATAG
Protein Sequence: METITHPTEQVLIKQEPLDEPDYSTWNENSPCDKLLKVEILEPDSTNIENMTCKECETLFVNEHELKIHQMTHSPDHTCFICKEFVRNRFQFVGHVRKHMCAKPFKCHSCIRTFPTSRETKLHQRVHSDERPYMCTECGKAFKQISTLKDHEVVHTGEKKFKCKICEGAFATATSLRRHIRVMHETVRSFRCHFCKEGFTSKQALKQHMAIHKDEDPLKCQCCGERLLDIEEFVAHRNKHIQLRQSGNCEYCGNKTFYFELKEHIQKMHHPRSCDICSLVFYDEKSIENHRKSHLEEPVREEYICAICGKKFEFPRYLKAHIKRHEDDYKKFRCDLCLKSFSSKRDLTDHLNVHANVKNYHCKVCDKAFRTQQSVNKHMPIHSEKRPFKCTICDKRFKKQSILRKHSFTHSRLRPYVCELCPKNYKSKESLRVHRFTHEKKKKRKCKACKKLFSFETVYKNHSCFSFWRFSVNNRRCNYCKRLCKTSSTYAYHIQGHCRVKSFSCSTCKVPLKYPYQVKLHKILHKDKESSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00328476;
90% Identity: iTF_00328476;
80% Identity: -