Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: znf711
Assembly: GCA_037349165.1
Location: JAZBNJ010000018.1:9390934-9397896[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0089 0.71 11.4 2.2 2 23 73 94 72 94 0.96

2 12 0.041 3.3 9.3 0.2 2 23 101 123 100 123 0.95

3 12 0.69 55 5.4 0.1 2 20 131 149 130 150 0.91

4 12 0.00019 0.015 16.7 5.4 1 23 159 181 159 181 0.97

5 12 3.3e-06 0.00027 22.2 2.5 1 23 187 209 187 209 0.98

6 12 0.063 5.1 8.7 1.4 1 20 215 234 215 236 0.92

7 12 1.1 85 4.9 4.8 3 19 255 271 254 276 0.92

8 12 7.9e-05 0.0063 17.8 2.6 1 23 560 582 560 582 0.97

9 12 4.1e-05 0.0033 18.7 5.9 1 23 589 611 589 611 0.98

10 12 0.013 1.1 10.8 0.0 1 23 619 644 619 644 0.93

11 12 1e-05 0.00081 20.6 2.3 1 23 650 674 650 674 0.97

12 12 1.3e-05 0.0011 20.3 1.2 1 22 680 701 680 701 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0089	0.71	11.4	2.2	2	23	73	94	72	94	0.96
2	12	0.041	3.3	9.3	0.2	2	23	101	123	100	123	0.95
3	12	0.69	55	5.4	0.1	2	20	131	149	130	150	0.91
4	12	0.00019	0.015	16.7	5.4	1	23	159	181	159	181	0.97
5	12	3.3e-06	0.00027	22.2	2.5	1	23	187	209	187	209	0.98
6	12	0.063	5.1	8.7	1.4	1	20	215	234	215	236	0.92
7	12	1.1	85	4.9	4.8	3	19	255	271	254	276	0.92
8	12	7.9e-05	0.0063	17.8	2.6	1	23	560	582	560	582	0.97
9	12	4.1e-05	0.0033	18.7	5.9	1	23	589	611	589	611	0.98
10	12	0.013	1.1	10.8	0.0	1	23	619	644	619	644	0.93
11	12	1e-05	0.00081	20.6	2.3	1	23	650	674	650	674	0.97
12	12	1.3e-05	0.0011	20.3	1.2	1	22	680	701	680	701	0.96

Sequence Information

Coding Sequence: ATGGATTCTAACCTATCATTCTTCAGTCTACCATTCGTGGACTCGGAGACTACAGACTTGGTGTTGAACATCAAGAATGATCGCTGCGGGTACGACGAGTTGCACACGAGTTTGCCGTCTCACGGCAATTTGTTGGGGTCAGACGATGTGTTGGCCCAATTTTTGTCTCCAGACGAGCCCTTGGAAGAGCCCGACTTGAATGGACCCACCACCTTGCACTGCGAGATATGCCGGAAGAAGTTTGATAATGCTAAAAAGTACTATGGACATTTGAGGATACATTCTAAGGGCAATGCTTGGGTTTGTGACAAGTGCCCTGAGCAAAAGTTTGCCACAAAGCAGGCCCTCATGAAGCACGGGCTGACGCATGCGCCTCTGGAACGGGTGTGGCGCTGCCCACAGTGTACCCTCTCCTTTGAGGCACTCTGGAGATTGCAACAACATCTCTTTTGTACACATCTAGAGTacagGCCACATAAATGTGATGAATGTGAGAAGGCTTTCCATAAGAAATCTGACTTAAAACGGCATAAGGACATGCACAGTAATATAAAGAAGTTTTCGTGTTCAGTGTGTGGGGTACAGTTTAGTGACAATTGTAATCTGAAGCGGCACATGTTGCGGCATACCAATGAGAAACCTTATTGTTGCGCGGGATGCGGCAATAGGTATAAACAGctgGCTTCCATGAAGCGACATAGTCAGAAGTGCCCAAAGAATCAGTTCAATCATAACCTGGACCCGACGGCGCGAAAAAACCACTGCAGAGTCTGCGGCATGTGTTTTCAATACAAAAGTGCCTTGCTCGAGCATTGCGTTAGAcaacacacaaacccatctaatAATATAACTAACAACATCGAGAAAGACGATAAACTACATCAAACAACAATCAGCATAGACCACAACAGAACTGTGGACAATATTGTCGATGATATCCTCTCCGCTGAAGACGATTACTTGACGATGTCCACGCAAAACGAAATACTAAACGTATATAACAACCAGACTGAAACAGATACCAATAATGATAATCTAATGCACGTAGAATTCCTTAAAGCAATGAATCAACTGCACAGCTTAGATGATGAATTATTTTACAATGATCTAGACCTAGATAATTTCCAAGCAAACCACATATTTAACATGAATACTAATGACATGGATTACGGAGACAAAAATGCTGAGATTCTTTTCGATTTTGCTGATAATGGCAGAAGTATGGATCAAGATATAATGAATGTACTTTCAGAAGTCGGCCCATCGTTTACTGAGACTAATAAACCTGAACCAACAAAAAATCCTACAGTTTCCGTAAATGAGTGTGCCACTATTTTCGAAAGCGACGTGGACTTGGAAGCTAGTACGAATTTAGCTGCAAATTTAAACCAACTAATAGGAGAAAACAACGTTCAGTATATTTCAACGGAAGATGACGATACGTTTATAATAAGTTTGAACAGTGCTATAGACGCGGAGCAGTTGACAGATATGTTGAACATAGGAGTTGAACTAGTTGAAAATAACAATGAAGAAGAAAAAGTACCCGAAGTTCATAGTACTGAAGTTGACAGTGAACCAATAGTGATTAAGATTCAAGAACCGATAGTAGATAAAGACGCTACTAGTGATAAAGAAAACACTGCAGTGAAaccaaaaataaagaaatgtaCTTTATTTGTATGCCGCACTTGtaataaagtttttaaaaagAAGGATAACTATAAATCCCACAAAGcgATTCACAACCCGTCTCTACGGGCGCATCGATGTCGCACGTGCGGCGAACGCTTCAGCTACCGTTCAACGCTCAATAAGCATCGCAAAACACACGAATCAGTACCCACCAAGCGTTTCCCTTGCGCGCTTGAGGGTTGCGACAAAGATTATAGCGCTGCTTGGATGTTGAAAAATCACATGGAGCGCGACCACGAGAAACTAATGCCGTATAAATGTGACAAGAAAGACTGCGGGAAAAGTTTCTACAAGCAGTCAGACTTGGTCAAACACGAAAGGTTCCACTCTGGCGCACGGCCCTACTCGTGTGACATCTGTCATCGCGCGTTCCCCCAAATCTCACACCTGAAGCGGCACGAACGAACCGTCGACTGCACTAAACAGTGA
Protein Sequence: MDSNLSFFSLPFVDSETTDLVLNIKNDRCGYDELHTSLPSHGNLLGSDDVLAQFLSPDEPLEEPDLNGPTTLHCEICRKKFDNAKKYYGHLRIHSKGNAWVCDKCPEQKFATKQALMKHGLTHAPLERVWRCPQCTLSFEALWRLQQHLFCTHLEYRPHKCDECEKAFHKKSDLKRHKDMHSNIKKFSCSVCGVQFSDNCNLKRHMLRHTNEKPYCCAGCGNRYKQLASMKRHSQKCPKNQFNHNLDPTARKNHCRVCGMCFQYKSALLEHCVRQHTNPSNNITNNIEKDDKLHQTTISIDHNRTVDNIVDDILSAEDDYLTMSTQNEILNVYNNQTETDTNNDNLMHVEFLKAMNQLHSLDDELFYNDLDLDNFQANHIFNMNTNDMDYGDKNAEILFDFADNGRSMDQDIMNVLSEVGPSFTETNKPEPTKNPTVSVNECATIFESDVDLEASTNLAANLNQLIGENNVQYISTEDDDTFIISLNSAIDAEQLTDMLNIGVELVENNNEEEKVPEVHSTEVDSEPIVIKIQEPIVDKDATSDKENTAVKPKIKKCTLFVCRTCNKVFKKKDNYKSHKAIHNPSLRAHRCRTCGERFSYRSTLNKHRKTHESVPTKRFPCALEGCDKDYSAAWMLKNHMERDHEKLMPYKCDKKDCGKSFYKQSDLVKHERFHSGARPYSCDICHRAFPQISHLKRHERTVDCTKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00156531;
90% Identity: iTF_00021575;
80% Identity: -