Cros027976.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000042.1:193720-195416[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0062 20 6.6 0.0 52 86 117 150 105 151 0.84 2 4 0.0064 21 6.6 0.1 51 86 210 244 191 245 0.80 3 4 0.1 3.3e+02 2.7 0.0 49 81 300 331 282 334 0.79 4 4 0.0016 5.1 8.5 0.1 48 83 400 432 381 435 0.79
Sequence Information
- Coding Sequence
- ATGGATGTAAATCCACATAATCAAAACCAGAGTTATTGGTTTGTGTTCAGAGAAGATCAAAGTAACGTTATATTTAGCAGCAACAACTTCACAATACAGAATCCTACACAAAtaacAGCACAAGAGGCTCGTTATATAGTGGACACTGGTACAGGAGACAGCAGACAGTACATCGAAATAAATGAAGCGCCCACAACCGTCCAACAAGAGCTGGCAGAGCCCACACCTTgtgaaaaagaagaagagaagCAAAAGGAAGAAGACACTTTCTGGGACCGGAGCAAAATCAAATTGCTCCTCACACTGTGCCTTGAGAACAAACTGAGTAACACTTCCGGTGCCAGAGACAGGACTCTCTGGAATGATGTTGCAGCTACAGTGGGCACCTCACCAGAGGAGTGCAACAAGAAATATAGGAACCTCAGAAGAACCTACATCAGGCTattgaaaaagaagaagatgGGCAGGAATATCAAATGGGCCCACTTTAACCTTTGCGACGAAATTTATAGGCAATACAAGAGCCTGCACCCTGCACTCATTGAGCCTTGGGAGGACATCAAAATAAGACGTCTCCTTAGTCTTTACATAGATAATCTCCACCAATTTAGAAACTCAGACTGCCTTCAAAAGGACATTTGGAAAGATATAGCTTCCCAGTTAGGCTCAACGGAATATAGTTGCTACCATAAGTTCAAAAACTTGAAAAGGACTTACGTGACCTGGCTAGAACGCAGTCGAGAATCTGGCAAGCTCATCAAGAAATGGCCGTACCAGCATTACTTTGAACGGATATTTTACAACTACCAGCCCAGTCTGGGACCCTGGGACCGCTTCAAGACTAAGCAGTTACTGAATGTATATGCTCAGCACAGCCACAAGTTCAGGAATCCTAAATTTCAAAAGAAGGAACTCTGGAAAGAAATATCTACAATGGTGGGGGAGAGTCCCAATGACTGTGATAGGAAATTCAGAAACTTGAAACAGACCTATATTGTTATAAAAAGCAAATTAGGCACTTCTAGACGTAACACAAAGTGGCtctattttgatgattttgAAGCCATCTATAATAGCGGGGCAACCTCGAGCAACAGCAAGGCAGACCAGCCCAACGGCACAGCTCAAGAGGATTACATCAAACAGTTACTTCAGTTTTACTTAGATcataaagttaaatttaaagaCCCTCTGACTAAGAAAAAGAATGTGTGGAGAATGATCAGTACCAAGTTGGGGCTATCTCCCGAGGAATGTGACAGGAAATTTAGAAATTTAAAGCAAACTTACAACAGGCTAGCAGACAGGAAAAAAGAGACAGGTCAAGATGTAAAATGGCCATATTATACTTAtttcgaaaaaatatataatgattCAAGGTCCTATTCtgaaagtaaacaaaataatattgatgATGATACTTTCTCAGAGATCAGGGTTGTTCAAGATGTCCAGGACAGGAAGGATAATGATCAGAAATTCGAAAGGCTTCTTAACTTGGTAGAAGAGTCAAATAACATACAAAGGGAGAGAAATAGAATTCTTCAGGCtttaatcaatcaataa
- Protein Sequence
- MDVNPHNQNQSYWFVFREDQSNVIFSSNNFTIQNPTQITAQEARYIVDTGTGDSRQYIEINEAPTTVQQELAEPTPCEKEEEKQKEEDTFWDRSKIKLLLTLCLENKLSNTSGARDRTLWNDVAATVGTSPEECNKKYRNLRRTYIRLLKKKKMGRNIKWAHFNLCDEIYRQYKSLHPALIEPWEDIKIRRLLSLYIDNLHQFRNSDCLQKDIWKDIASQLGSTEYSCYHKFKNLKRTYVTWLERSRESGKLIKKWPYQHYFERIFYNYQPSLGPWDRFKTKQLLNVYAQHSHKFRNPKFQKKELWKEISTMVGESPNDCDRKFRNLKQTYIVIKSKLGTSRRNTKWLYFDDFEAIYNSGATSSNSKADQPNGTAQEDYIKQLLQFYLDHKVKFKDPLTKKKNVWRMISTKLGLSPEECDRKFRNLKQTYNRLADRKKETGQDVKWPYYTYFEKIYNDSRSYSESKQNNIDDDTFSEIRVVQDVQDRKDNDQKFERLLNLVEESNNIQRERNRILQALINQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00021125; iTF_00155098;
- 90% Identity
- -
- 80% Identity
- -