Ctib000105.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770262.1:2320174-2321640[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0039 24 6.6 0.1 21 45 205 229 199 236 0.82 2 10 0.027 1.6e+02 3.9 0.3 21 49 233 260 227 264 0.79 3 10 0.0016 9.6 7.8 0.6 24 45 263 284 256 291 0.84 4 10 0.2 1.2e+03 1.1 0.2 21 45 288 312 284 315 0.87 5 10 0.0026 16 7.1 0.1 21 45 316 340 312 344 0.91 6 10 0.062 3.8e+02 2.7 0.2 21 32 344 355 340 370 0.76 7 10 0.023 1.4e+02 4.1 0.2 21 45 372 396 359 403 0.88 8 10 0.43 2.7e+03 0.0 0.1 21 43 400 422 396 427 0.88 9 10 0.0021 13 7.4 0.2 21 44 428 451 416 455 0.83 10 10 0.00017 1 10.9 0.3 23 48 458 483 451 486 0.89
Sequence Information
- Coding Sequence
- ATGGCTGGAAAAATGCTTGAAATGAAAAGCATACTGCTGGCCGAGTTCACAGCCGAAAGCTGTAGTTTTTCCGGCGCGGACGACAGCTGCGATTCGGCCTTCATCCTTACGGAAGACATGATAAAAAAGGAGCCCGAATTCATAATCGACGACGACCTGGAAACGCGAAAGCTTCGAGACTTTCTGCGCAACCCGAACCTCGATCCCGAGGAAAAATCGAACCTGACCTGGCACAGCTGTATCGTTTGCGAGGAACGTTTTTTGAACATTGAGGATCTGTCGTTACACGTTCAGGGCCACATAAAGCGCGAACCGGACGACGGCGCACCGCCGACGAAGAACAAACTTCGGAAAATCGGCATTCGTTCGGAGTATACGGGCTTCACGAAGGACGAACTGTTCCGCGACTACGTGAAAATCAAGGTGGGTCTGGAGGGCGATGCCACATACTCGTGCAAGCTGTGCACCGACAAGGTGTTCGACAAGCCGACCGCGATCCGAAACCACATGCGAATCCACGAGAATCCCGTCTACAAGGATCGCGACTGTACCGTCTGCAAGAGGACATTTCTGCGCCGGGATACGCTTCTGGTGCACATGCGAACACATACCCGCGAACGCCCGTTTACCTGCGAAATATGCGATGCAAATTTCGCTCATTCCAGTTCACTCGTGTCCCACCGGCGAATACATAGCGGGGAGAAACCATACGAGTGCTCCGTGTGCCATATGCGATTTCGGGAATCGGGACAAATGTCTGCGCATCGGCGAACGCACTTCGATAAGAACTTTCAGTGCCCCCAGTGCAAGCAGCTGTATTCATCGTCGAAGAACTTACGCGCCCATTTGCGCACCCACACGGGCGAGCGACCGTACAAGTGCGAATGTTGCGATAAATCGTTTCGTACGTCGACATCCTTGACGCTGCACATCCGCGTCCATACCGGCGAGAAACCGTACAAATGCCAGATTTGCGGATTCGCAACGAAACAATCGGGCTGCCTGAAGGCGCACCTCCGGACACATACTGGCGAGAAGCCCTTCACCTGCGACATCTGCAAGCGATCGTACTCGGAAAAGAAGCGGCTCGTCACGCACTATCGGACGCATACTGGCGAACgaccatacaaatgtacacaCTGTGATGCTGCCTTCATACGCAGTGATAATCTGAGCAGTCACATCCGGACGCACACGGGAGAGCGACCTTTCAAGTGCGAACACTGCGATAAAACATTTGCGCAGAAGACAACCCTGAGGACGCACGAACGAGTCCATTCCGGCGAAAAACCGTACGAATGTCCGTACTGTAAGATGCGATTCCGGCAGTCGGGGATTCTTATAACACATATGCGAACGCATAACGGGAGCACACCCTATCAGTGCCAACTTTGCGATCGATCTTACAAGCAGAACGGAAATCTACGGCGGCATATTCAGGTTGATCATAATGGGGATACTTactag
- Protein Sequence
- MAGKMLEMKSILLAEFTAESCSFSGADDSCDSAFILTEDMIKKEPEFIIDDDLETRKLRDFLRNPNLDPEEKSNLTWHSCIVCEERFLNIEDLSLHVQGHIKREPDDGAPPTKNKLRKIGIRSEYTGFTKDELFRDYVKIKVGLEGDATYSCKLCTDKVFDKPTAIRNHMRIHENPVYKDRDCTVCKRTFLRRDTLLVHMRTHTRERPFTCEICDANFAHSSSLVSHRRIHSGEKPYECSVCHMRFRESGQMSAHRRTHFDKNFQCPQCKQLYSSSKNLRAHLRTHTGERPYKCECCDKSFRTSTSLTLHIRVHTGEKPYKCQICGFATKQSGCLKAHLRTHTGEKPFTCDICKRSYSEKKRLVTHYRTHTGERPYKCTHCDAAFIRSDNLSSHIRTHTGERPFKCEHCDKTFAQKTTLRTHERVHSGEKPYECPYCKMRFRQSGILITHMRTHNGSTPYQCQLCDRSYKQNGNLRRHIQVDHNGDTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202859; iTF_00203773; iTF_00324638;
- 90% Identity
- iTF_00202859;
- 80% Identity
- iTF_00324638;