Ctib000105.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chorisops tibialis
Gene Symbol
-
Assembly
GCA_963669355.1
Location
OY770262.1:2320174-2321640[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0041 0.46 12.4 0.4 1 23 150 173 150 173 0.97
2 12 0.00016 0.018 16.9 1.3 3 23 183 203 182 203 0.98
3 12 6.5e-06 0.00073 21.2 0.7 1 23 209 231 209 231 0.98
4 12 0.0001 0.011 17.5 2.1 1 23 237 259 237 259 0.99
5 12 2.7e-06 0.00031 22.4 1.5 1 23 264 286 264 286 0.99
6 12 1.3e-05 0.0015 20.2 3.6 1 23 292 314 292 314 0.98
7 12 7.6e-06 0.00086 21.0 2.0 1 23 320 342 320 342 0.99
8 12 0.00013 0.014 17.2 2.7 1 23 348 370 348 370 0.99
9 12 1.6e-07 1.8e-05 26.3 1.4 1 23 376 398 376 398 0.99
10 12 9.1e-07 0.0001 23.9 3.7 1 23 404 426 404 426 0.98
11 12 6.2e-06 0.0007 21.3 0.7 1 23 432 454 432 454 0.99
12 12 1.6e-07 1.8e-05 26.3 0.7 1 23 460 483 460 483 0.98

Sequence Information

Coding Sequence
ATGGCTGGAAAAATGCTTGAAATGAAAAGCATACTGCTGGCCGAGTTCACAGCCGAAAGCTGTAGTTTTTCCGGCGCGGACGACAGCTGCGATTCGGCCTTCATCCTTACGGAAGACATGATAAAAAAGGAGCCCGAATTCATAATCGACGACGACCTGGAAACGCGAAAGCTTCGAGACTTTCTGCGCAACCCGAACCTCGATCCCGAGGAAAAATCGAACCTGACCTGGCACAGCTGTATCGTTTGCGAGGAACGTTTTTTGAACATTGAGGATCTGTCGTTACACGTTCAGGGCCACATAAAGCGCGAACCGGACGACGGCGCACCGCCGACGAAGAACAAACTTCGGAAAATCGGCATTCGTTCGGAGTATACGGGCTTCACGAAGGACGAACTGTTCCGCGACTACGTGAAAATCAAGGTGGGTCTGGAGGGCGATGCCACATACTCGTGCAAGCTGTGCACCGACAAGGTGTTCGACAAGCCGACCGCGATCCGAAACCACATGCGAATCCACGAGAATCCCGTCTACAAGGATCGCGACTGTACCGTCTGCAAGAGGACATTTCTGCGCCGGGATACGCTTCTGGTGCACATGCGAACACATACCCGCGAACGCCCGTTTACCTGCGAAATATGCGATGCAAATTTCGCTCATTCCAGTTCACTCGTGTCCCACCGGCGAATACATAGCGGGGAGAAACCATACGAGTGCTCCGTGTGCCATATGCGATTTCGGGAATCGGGACAAATGTCTGCGCATCGGCGAACGCACTTCGATAAGAACTTTCAGTGCCCCCAGTGCAAGCAGCTGTATTCATCGTCGAAGAACTTACGCGCCCATTTGCGCACCCACACGGGCGAGCGACCGTACAAGTGCGAATGTTGCGATAAATCGTTTCGTACGTCGACATCCTTGACGCTGCACATCCGCGTCCATACCGGCGAGAAACCGTACAAATGCCAGATTTGCGGATTCGCAACGAAACAATCGGGCTGCCTGAAGGCGCACCTCCGGACACATACTGGCGAGAAGCCCTTCACCTGCGACATCTGCAAGCGATCGTACTCGGAAAAGAAGCGGCTCGTCACGCACTATCGGACGCATACTGGCGAACgaccatacaaatgtacacaCTGTGATGCTGCCTTCATACGCAGTGATAATCTGAGCAGTCACATCCGGACGCACACGGGAGAGCGACCTTTCAAGTGCGAACACTGCGATAAAACATTTGCGCAGAAGACAACCCTGAGGACGCACGAACGAGTCCATTCCGGCGAAAAACCGTACGAATGTCCGTACTGTAAGATGCGATTCCGGCAGTCGGGGATTCTTATAACACATATGCGAACGCATAACGGGAGCACACCCTATCAGTGCCAACTTTGCGATCGATCTTACAAGCAGAACGGAAATCTACGGCGGCATATTCAGGTTGATCATAATGGGGATACTTactag
Protein Sequence
MAGKMLEMKSILLAEFTAESCSFSGADDSCDSAFILTEDMIKKEPEFIIDDDLETRKLRDFLRNPNLDPEEKSNLTWHSCIVCEERFLNIEDLSLHVQGHIKREPDDGAPPTKNKLRKIGIRSEYTGFTKDELFRDYVKIKVGLEGDATYSCKLCTDKVFDKPTAIRNHMRIHENPVYKDRDCTVCKRTFLRRDTLLVHMRTHTRERPFTCEICDANFAHSSSLVSHRRIHSGEKPYECSVCHMRFRESGQMSAHRRTHFDKNFQCPQCKQLYSSSKNLRAHLRTHTGERPYKCECCDKSFRTSTSLTLHIRVHTGEKPYKCQICGFATKQSGCLKAHLRTHTGEKPFTCDICKRSYSEKKRLVTHYRTHTGERPYKCTHCDAAFIRSDNLSSHIRTHTGERPFKCEHCDKTFAQKTTLRTHERVHSGEKPYECPYCKMRFRQSGILITHMRTHNGSTPYQCQLCDRSYKQNGNLRRHIQVDHNGDTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00325033;
90% Identity
iTF_00202859;
80% Identity
iTF_00325033;