Ctib032097.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963669355.1
- Location
- OY770264.1:602413-606883[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-112 3.3e-108 363.0 36.6 1 299 177 460 177 461 0.92 2 2 0.061 1.5e+03 -0.4 3.6 208 247 478 516 463 534 0.66
Sequence Information
- Coding Sequence
- atgatggaaaatttaaatagtGGTGATGAGAGTGAGTGTAAGAAATCGAAACTGGAACCGAATAATAATATTTTGCCGGACAATAACGTCTTAATAAAAGCTGATGTTGCTCATAACGATGACGAAGAAACGGGCGAAGAATTCGATTTTAGTGATGATGATTTTGCCGGCTTGGACAACGAAGATCTTCCCACTATTCATGATTCAGACAACGAACTAGTGACTAAAACGAGAAGTGATAAAAATAATGCCAAAGATTCAGTGATCGATGCTTGCAACGCAACATTGATCGAAAACCAAATTCTACACCATGCTTCTGCACCGCAACCTTCACCGCCACCTCCCCAAGAATCGCCATTATCACTCGCCGATTGTAATACAATGGACAGGATTGATAGCACTTCGATCGATCCGAATGCATCGATACACCTGGCCGAAGTCAGTGTTTCCGAAGACGAAGACGACGTGTTCTACAGCGATGATGAACCTGATTTGATTGTGGAATTTCTAGGAAAAGCCAATGAAATCGCGGAAGCAAGATTAGCAGCACGCCGTCAGGCACGTGCTGAGGCGCGCGAAATACGAATGCGTGAACTGGAACGACAACAGAAGGAACAAGAGCAAAATGCTGATAGAGTATTCGACATGCAGACTGCAGCTGGAATTGATCCTCTGTCTAGATCGCGTCACACCATATCTGCAAGTTCTGCTCGAgctagttcgatgtcgtcaagGCGAAGTAGTGAAGATTCACTGGAAGAAGAAGGCCGAAGTTTACGAGATATTAGACATGAGCTTAAAGACGTAGAAGAAAGATTTAGAAAAGCAATGATAGCCAATGCACAGCTGGACAATGAGCGAGCTTCACAATCTTATCAAATTCAACTGCTTAAGGATAAATTGGAAGAGATGGAGGAGAATTATGCACAGCTTCAGCGTGAATACAAGGAAAAATGTCGCGATCATAATGCtttaaaacgaaattttgataaaattgaagaAGAACTGAAATTAGTTCGAGGTCAATTAGACGAACGAGATACTCTTATATCAGAGCAAGGTTTAGTTATAGTCTTGGTAGAAAATGAAGATGGCTCAGATGCCAAACGCGCTCTAGTCACTATAGATAACGCACAACTGTTAGGTTCGGTTCAAGGTTCATTAGaTGTCCGACTCAAGAAGTTTACCGAAGAAAAACAAGAACTTCAAAGGGAAGTGAAAACCCTTCAACAGCAATTGTCCGATATAAAATCACAGCGTAAGGGTAGCTCTATGAATGGACCAGTTGGAAATGAAGACGATTACGACGCGCAAAGAGAAGCCAACAAAATCATTTCCGAATATAAATACAAGTTACAAAAAGCCGAACAAGAAATCGCTAGTCTCCAAGCAAGCTTGGCACGATCCGAAACGCAAGTTATACGATACAAAAGTACTGCGGAAGCGGCTGAAAAAGCAGAAGGTGAATTAAAAATTGAACGTAGGAAACTTCAACGCGAGAATCGCGAGGCCATGGAACGGTTAGAGGAGCTCGAAACATCCAACAATCACCTGCTAAAACGTTTAGATAAACTGAAGAATGCTAAAAGTGCATTACTAAAAGACCTCTGA
- Protein Sequence
- MMENLNSGDESECKKSKLEPNNNILPDNNVLIKADVAHNDDEETGEEFDFSDDDFAGLDNEDLPTIHDSDNELVTKTRSDKNNAKDSVIDACNATLIENQILHHASAPQPSPPPPQESPLSLADCNTMDRIDSTSIDPNASIHLAEVSVSEDEDDVFYSDDEPDLIVEFLGKANEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRHTISASSARASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEENYAQLQREYKEKCRDHNALKRNFDKIEEELKLVRGQLDERDTLISEQGLVIVLVENEDGSDAKRALVTIDNAQLLGSVQGSLDVRLKKFTEEKQELQREVKTLQQQLSDIKSQRKGSSMNGPVGNEDDYDAQREANKIISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEGELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202580;
- 90% Identity
- -
- 80% Identity
- -