Bcha029970.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949128065.1
- Location
- OX421896.1:119483396-119487626[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.24 1e+04 -3.3 1.1 41 41 46 46 9 103 0.48 2 3 4.2e-112 1.8e-107 360.3 34.2 1 299 166 449 166 450 0.91 3 3 0.091 3.9e+03 -1.9 4.1 220 244 478 502 454 523 0.46
Sequence Information
- Coding Sequence
- ATGGAAATAAACGAGAGTGCCTGTAAAAAATCTAAAATAGAGAGTTCTCatgaacaaaataataataacgttCTATCGGAAAGTAAAAACATAATGAAGAATGATGACGAAGAAATCAGTGAAGAATTTGATTTCAGCGATGACGATTTCAATGTTTCGGAGCATTTAGATAAATCAGTCATTCTTGGTTCGCGCAATGATATTGAAACAGTGTTTAGTGATAAAAAGGATTCCAAAGATTCGTTATTCGATGCACGAAATTCAGCATTGATCGAAACACAGACCAGTATCAAAAATTCCAGAGATGCCACACCATCACCACCACAGACTATTGCTGAGTACAGTACCATCGATAGGATTGGCAGCACGCATATCGATCCGAACGCAGCGAATCACCTGGCCGAAGTGAGCATTTCCGAAGACGAAGACGATGTATTCTATAGCGACGATGAGCCCGATCTGATTGTTGACTTTCTGGGAAGAGCCAATGAAATTGCGGAAGCAAGATTAGCTGCACGTCGTCAAGCACGTGCGGAAGCGCGCGAAATCCGAATGCGTGAACTGGAACGGCAACAAAAGGAACAAGAGCAAAATGCTGATAGAGTATTCGATATGCAGACAGCAGCTGGAATCGATCCTCTGGCTAGGTCACGTCATACAATATCTACAAGTTCTGCACGAGCTAGCTCGATGTCGTCAAGGCGAAGCAGTGAAGATTCGCTGGAAGAAGAAGGCCGAAGTTTACGAGATATAAGACATGAGCTTAAAgATGTAGAAGAAAGGTTTAGAAAAGCAATGATAGCCAATGCACAGTTAGACAATGAACGTGCCTCACAATCTTATCAAATTCAATTACTTAAGGATAAATTGGAAGAGATGGAAGAAAACTATGCACAGCTACAACGTGAATACAAGGAGAAATGCCGCGATCATAACGCCTTAAAACGAAATTTCGACAAAATTGAAGAAGAACTTAAATTAGTTCGAGGACAATTGGACGAACGAGATACTCTTATAGCTGAACAAGGTTTAGTTATAGTCCTGGTGGAAAATGAAGATGGCTCAGATGCCAAACGTGCTCTAGTCACTATAGATAACGCACAACTATTAGGTTCAGTTCAAGGTTCTTTAgATGTCCGACTCAAGAAATTCACTGAAGAAAAACAAGAGCTTCAAAAGGAAGTGAAAATTCTTCTACAGCAACTGTCGGATATAAAATCGCAACGGAAAGGCGGTTCTATGAACGGACCTGTGGGAAATGATGACGATTACGATGCGCAAAGAGAAGCAAACAAAGTCATTTCCGAATATAAATACAAGCTACAAAAAGCAGAACAAGAAATCGCTAGTCTTCAAGCCAGCTTGGCAAGATCTGAAACACAAGTTATTCGATATAAGAGTACGGCAGAAGCGGCAGAAAAAGCCGAAGCTGAATTGAAAATTGAGCGACGAAAACTACAACGCGAGAATCGTGAAGCTATGGAACGTTTAGAAGAGCTGGAGACATCTAACAACCATCTACTGAAGCGTTTAGATAAATTAAAGAATGCTAAAAGTGCATTACTGAAAGACCTTTGA
- Protein Sequence
- MEINESACKKSKIESSHEQNNNNVLSESKNIMKNDDEEISEEFDFSDDDFNVSEHLDKSVILGSRNDIETVFSDKKDSKDSLFDARNSALIETQTSIKNSRDATPSPPQTIAEYSTIDRIGSTHIDPNAANHLAEVSISEDEDDVFYSDDEPDLIVDFLGRANEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLARSRHTISTSSARASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEENYAQLQREYKEKCRDHNALKRNFDKIEEELKLVRGQLDERDTLIAEQGLVIVLVENEDGSDAKRALVTIDNAQLLGSVQGSLDVRLKKFTEEKQELQKEVKILLQQLSDIKSQRKGGSMNGPVGNDDDYDAQREANKVISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00324393;
- 90% Identity
- -
- 80% Identity
- -