Cnem016270.2
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- Arid2
- Assembly
- GCA_949316135.1
- Location
- OX438616.1:2750355-2773182[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-07 0.0019 19.2 0.0 2 55 949 1005 948 1009 0.89 2 2 4.9e-09 2.3e-05 25.3 0.0 2 78 1071 1152 1070 1153 0.87
Sequence Information
- Coding Sequence
- ATGGCGAAATCTCAAATAAATACCAAATCAAGTCAATACATAAACAACAAGGATACATTCCTAAAGGATCTGAAGCAGTTTAATGaaagtaaaaatgtCCCATTCAAAACGCCGATATCGGTAAATGGAATTGAAATAGATTTATACTTATTCTACACATTGGTACAACAAAAAGGAGGATTGAGCAAGgTAAATCAAACAGACGCTTGGGATTCATTGATGAGACCTCTCCATCTACCGCATCCATGTATTAATGGTTCAactttactgaaaaaattgTACTGCACTTATTTGGAAAAGTATGAGAGAGCCAAGGGTCCACCAGGCAGGGATGATGATATGGACTTGGATGAGGATCCCAGGAGGAGCAGGGGTGGAGGTTTCCCCAGGGTGCCTTATGGCAGTGGGACTTATGTGTCAGCATCGGGTGAAACTCTAGTTCGTACATCGATGCCAAAGATTGCAGGCCCATCAGAGAAACTATCGCTGTCTCTTTTGTCTCCTCTGCCAAATGAGCAGGACTTTGCTATAAATGTCTGCACCGTACTAGCGGCGGATCATTCTAATAGACTTCCTTTGTCTACTACACCTCATATATTGGACTTCTTATTGGCTCATGCTGGTGTTTACAATCATGCGAACCTCCGCGACACGATCGGCCGTTCATACTTCGAATCCCGAGGTCGTTACCCTGACGAGTTTTGGAAGCTTCGATCAGGGGGAGGTGGGGCTAAGGAACTAGCTGATGAGAGCAAATTCCAGCTCCCAGGAGTTGAACAGCCAGAGCTCATGGTCCAGGCTTTAGCAGCTCATAATACTCTCACGGATTGCTTGATGAACAAAGGAGAGGTGGAAGATGAAACGGATAAGGTTGTTGAAGAGGATGTTCTAGAAGATTGGGTGACGGAGATATCAGAGGAGGACCAGCTCTTCGCTCCAGAGCTGCCAGGCGGTGCGAGCTGTGTTTACACTCAGCGCGTGTTACAGATAGCTTCGATAGTGCGCTCGCTGTCTTTCTATGAAGAGAACGTGCAGTTTCTGTCCAAGAACACCACACTCATAAGATTCCTTCTGTTGTGTTGCAACTGTTGGGTTGGATCATTGCGTCAATCGGGTCTCGATACACTCGGGAATATAGCTTCGGAACTGATCATTAAGGACCCAGCGACATGTTTGATATCGCGACACATTCTGTCGATTATTCAGTCCGCTCTGATTTCATCTGACCGTGCGAGAGTGCTCGCTGCGCTAGAATTGCTGAACAAACTCGCGCAAAACGATATCAACGAGGACGCACTGCTTAAATCGCTTGAATCCAGGgtGTACTCGGACATTTGCGCGCTGCTGACCCTGCGTGACATCATGGTGCTAGTGTGCACGCTGGAGTGCATGTACGCGGTGACGTCACTGGGCGAGGCGGCCAGCGAGGGCGTGGCGCGCGTGCGCGGGCTCGTGCACACGCTCGTGGCGCTCGTCACTGTCGAGGTAACGCGGATACGTAATGGTGCTGTGTGCACGCTGGAGTGCATGTACGCGGTGACGTCACTGGGCGAGGCGGCCAGCGAGGGCGTGGCGCGCGTGCGCGGGCTCGTGCACACGCTCGTGGCGCTCGTCACTGTCGAGGTAACGCGGATACGTAATGGTGCTGTGTGCACGCTGGAGTGCATGTACGCGGTGACGTCACTGGGCGAGGCGGCCAGCGAGGGCGTGGCGCGCGTGCGCGGGCTCGTGCACACGCTCGTGGCGCTCGTCACTGTCGAGGTAACGCGGATACGTAATGGTGCTGTGTGCACGCTGGAGTGCATGTACGCGGTGACGTCACTGGGCGAGGCGGCCAGCGAGGGCGTGGCGCGCGTGCGCGGGCTCGTGCACACGCTCGTGGCGCTCGTCACTGTCGAGGTAACGCGGATACGTAATGGTGCTGTGTGCACGCTGGAGTGCATGTACGCGGTGACGTCACTGGGCGAGGCGGCCAGCGAGGGCGTGGCGCGCGTGCGCGGGCTCGTGCACACGCTCGTGGCGCTCGTCACTGTCGAGGTAACGCGGATACGTAATGGTGCTGTGTGCACGCTGGAGTGCATGTACGCGGTGACGTCACTGGGCGAGGCGGCCAGCGAGGGCGTGGCGCGCGTGCGCGGGCTCGTGCACACGCTCGTGGCGCTCGTCACTGTCGAGGTAACGCGGATACGTAATGGTGCTGTGTGCACGCTGGAGTGCATGTACGCGGTGACGTCACTGGGCGAGGCGGCCAGCGAGGGCGTGGCGCGCGTGCGCGGGCTCGTGCACACGCTCGTGGCGCTCGTCACTGTCGAGGTAACGCGGATACGTAATGGTGCTGTGTGCACGCTGGAGTGCATGTACGCGGTGACGTCACTGGGCGAGGCGGCCAGCGAGGGCGTGGCGCGCGTGCGCGGGCTCGTGCACACGCTCGTGGCGCTCGTCACTGTCGAGGTAACGCGGATACGTAATGGTGCTGTGTGCACGCTGGAGTGCATGTACGCGGTGACGTCACTGGGCGAGGCGGCCAGCGAGGGCGTGGCGCGCGTGCGCGGGCTCGTGCACACGCTCGTGGCGCTCGTCACTGTCGAGGCACAAAGTTACGGCCCTCGTGCTTGCATTCTGATGCGTGTCGTGGAAACTGTCAGCGGACCGACTGCCCTTGCAGTGCAGCAGGAGAGGGACAATCAACAACAGCAACAGCAGGTCACGCAGTCCCCAGTGAAACCGCAATTAGTTCAAGTACAGGAGTCACCACAAGCGCCATCTACCCCGCAACAGGCAACAACTTCAATGTCCAATCTACAGCAATCTCATATGCAGCAGAGGGCAGCACAGGAAAACGAGCACTTCGCTCTCGGCTGGCTGCGCTCTATGTACGAGCCGCTGCCGGCGCACGACCACAGCGCGTGCGACGCGGCGGACGTGTACCGCCTGTACCGCGCGCTCTGCAACAAGCGCAGCAGGAAGCCGCTGCCGCCCGAGCACATGTGTCGCCTCGTCAGGTCAGTGCACGTGCATAACGACTGTACTGTATGGTTAGAACGAGCACTTCGCTCTCGGCTGGCTGCGCTCTATGTACGAGCCGCTGCCGGCGCACGACCACAGCGCGTGCGACGCGGCGGACGTGTACCGCCTGTACCGCGCGCTCTGCAACAAGCGCAGCAGGAAGCCGCTGCCGCCCGAGCACATGTGTCGCCTCGTCAGAACGAGCACTTCGCTCTCGGCTGGCTGCGCTCTATGTACGAGCCGCTGCCGGCGCACGACCACAGCGCGTGCGACGCGGCGGACGTGTACCGCCTGTACCGCGCGCTCTGCAACAAGCGCAGCAGGAAGCCGCTGCCGCCCGAGCACATGTGTCGCCTCGTCAGAACCGTATTCGGTGGGACGGTTGGCCCAAACAAGGTGACTCTTTCCACGGGAGAGACCCAGCAAGTTTACGTCGGGATCAGAGCGAAGAACCCACAGAATAGAACATCTTCCGTAGCAGGTCCATCATCGCCGATATTGAAAGCGCAATTAACAAACAAGACGGCCAATGTTGAAGTGAAACAAGTAGTTCCACAAGTACAAGCGCAGCCTCAACACCCGCATTTATCTCAAGCTCTGGAGTCGAATCAGTCGAATACATCACTAATAAAACACTTATTAGCACATAAAGTAAGCCCCGCCCTACAACAAACGCAAgTAGCTCAAAGGCAACAAAACCAACAGCGATCAACACCGGCTACCACAGTTGTTGTACAACAAAATGCTTCCGGTTCGATGGAGGTGGATCCGGAAGCTTTGATAAAGTGTACAACTATCACTCCAGGTGGTATTGCCAGCAGTATGCCGAATAATGAAaagttgaTGGTCACAGGGACTGATGATGCTATAGcacCTAAAGATGATCCGGACCAAATTCAAATAGACGATCAGGCTCAAATAACTATTaaatccGCACAAAACAAAATGCTAGCAGATCTGCTAGAAAAGAAGTCCAACCCACCGGTACAGGTGGTACAAATGTCACCACAAATCAATGCACCCACAATACAAATCACGGAAACAGGTCAAATAGTTCAGGTCAAAGCTGACCCCAATCCTGTCATACAGATCAATGACAGTGGTATCATGTCCCAAGGAGGTCAATACTTCCAGATCAAAAACGAACAAGGTCAActaatacaaataaagaacGATCAAGGCCATATAATACAGCTAAAAGGAGATCAATTGCAAGGAcctttaatacaaattaatacaaagaACGATCAAGGTCAGATTATGCAAGGGGGACCGATTATGCATGGAGGTCAAATTATACAGCAGGGAAGTCAGATAATACAGGGAGGCCAGATAATACAACAAGGCGGGCAAATAATACAGCAAGGGGGTCAATTAATACAACAAGGGGGTCAAATAATACAAGGGGGtcaaataatacaacaaaGTGGGCAAATAGTACAAGGAGGTCAAATCGTTCAAGGGGGACAGATAGTACAAGGGGGTCAAATAGTACAGGGTGGTCAAATAGTACAACAAGGTCAAATCGTACAAGGAGGGCAGATTATGCAAAGTGTAATCCAAGGTCAAATGATCCAAGGCCAGGTCAAAGAGAAGGAGCAAATGGTTGAAAGTGTAAACACCGATCATTCTTATACGGAACCACCGGCTAAGAAAGTGAAGGTCGAGGAAAAAAGAGAGaacAATTCGCCGCAAGAGAGCGTTTCCAAGACCGCCGCAAACTTGTACGCGGCGCTAGCTGCATCAGCATTGGAAGATGAAGAAGACTTGATGCCACCAAAGCAAGAACCAGTGGATGTACAACAGCCTGTTATAGTTTCAGGCAACACTGAAAATTCTTCTGTCATCATTCAGGAACCTATATTAcaggtGCAGCAACCCACTATGCAGGTTCAGCAACCTACATTACAAGTCCAACAACAACCCACTTTACAGaTGCAACAACCCATGCAACACGTGCAACAAGTGCAACAGCCGATGCTGCAAGTGCAGCCGATGGATGTACAGAACATCATCGCATCTCAATCTGGGCAGATCATTATACaagAGAAGCCAATAGTGTCACAACAGACTCAGTTTGTTCAACAGCCGATGCAAATTATTGCTACACAAGGAACTTCACAGCCTGGTCTAAGTTACATAACACAGAATATTCCTGGTAATATGATGCAGAAGACTATAATAATAGTTCAGGGTCCTACAGGGGGTGGACCCCTGACTCTTACGGTGAACAACCCATCTGGTTTGGATGAGGCGACGTTAAACAACCTTATTGCCCAAGCAACAGAGGCGATAGCGCAACAGCAAATAATTCAGAATTCAGGAGTGATACAAAACGCACAAAGAGTGATAGTGAGTCAGCCGACACTTGTTAACACGTCACAGCCTATCACTATGGTCAAAACCGCACTGTCACAGaatCCTCCGCAACTTACTCCAAGCCAGCAACCAATAATAACATCGCAACCGCAACCGCACAAGGCCATTGTGAATCAACAGCCGCAACAGATAGTGGTCACGCAAAAACAACCGCCCGCTTTGATAAGCACCACCGGGAATAACCAGGTGATTCAAGGTAACCAAACTTTAATGCAAGGTAATCAGCAGATAATAGCCGTGTCGAACAACCAACAGATAATAATGAACACGCCAATGAAGCCCGTACATAGAGTTGTGCAAAATCAAAGGCCTCAGACGGAAAACAAAACGAGCGTCATACAAACTAGTACATCTGGCCAGCCGTTGATGCGTCAGGTGATCACCCGCCAACCTGTTATGGTGGGGAGTACTAAAATAGGGGAGAAGGAAGTCGTCGTCTCACAGCCTATAGTGCCAgagAAACCTACAACTCCTGCCCCTAAGCCGGCGTCAACCCCTCCGCCTGCTTCAACCCCTGCAGCCGAAGAAACACCCTGGATCTGCCATTGGAGAGGATGCGGCAAGTAA
- Protein Sequence
- MAKSQINTKSSQYINNKDTFLKDLKQFNESKNVPFKTPISVNGIEIDLYLFYTLVQQKGGLSKVNQTDAWDSLMRPLHLPHPCINGSTLLKKLYCTYLEKYERAKGPPGRDDDMDLDEDPRRSRGGGFPRVPYGSGTYVSASGETLVRTSMPKIAGPSEKLSLSLLSPLPNEQDFAINVCTVLAADHSNRLPLSTTPHILDFLLAHAGVYNHANLRDTIGRSYFESRGRYPDEFWKLRSGGGGAKELADESKFQLPGVEQPELMVQALAAHNTLTDCLMNKGEVEDETDKVVEEDVLEDWVTEISEEDQLFAPELPGGASCVYTQRVLQIASIVRSLSFYEENVQFLSKNTTLIRFLLLCCNCWVGSLRQSGLDTLGNIASELIIKDPATCLISRHILSIIQSALISSDRARVLAALELLNKLAQNDINEDALLKSLESRVYSDICALLTLRDIMVLVCTLECMYAVTSLGEAASEGVARVRGLVHTLVALVTVEVTRIRNGAVCTLECMYAVTSLGEAASEGVARVRGLVHTLVALVTVEVTRIRNGAVCTLECMYAVTSLGEAASEGVARVRGLVHTLVALVTVEVTRIRNGAVCTLECMYAVTSLGEAASEGVARVRGLVHTLVALVTVEVTRIRNGAVCTLECMYAVTSLGEAASEGVARVRGLVHTLVALVTVEVTRIRNGAVCTLECMYAVTSLGEAASEGVARVRGLVHTLVALVTVEVTRIRNGAVCTLECMYAVTSLGEAASEGVARVRGLVHTLVALVTVEVTRIRNGAVCTLECMYAVTSLGEAASEGVARVRGLVHTLVALVTVEVTRIRNGAVCTLECMYAVTSLGEAASEGVARVRGLVHTLVALVTVEAQSYGPRACILMRVVETVSGPTALAVQQERDNQQQQQQVTQSPVKPQLVQVQESPQAPSTPQQATTSMSNLQQSHMQQRAAQENEHFALGWLRSMYEPLPAHDHSACDAADVYRLYRALCNKRSRKPLPPEHMCRLVRSVHVHNDCTVWLERALRSRLAALYVRAAAGARPQRVRRGGRVPPVPRALQQAQQEAAAARAHVSPRQNEHFALGWLRSMYEPLPAHDHSACDAADVYRLYRALCNKRSRKPLPPEHMCRLVRTVFGGTVGPNKVTLSTGETQQVYVGIRAKNPQNRTSSVAGPSSPILKAQLTNKTANVEVKQVVPQVQAQPQHPHLSQALESNQSNTSLIKHLLAHKVSPALQQTQVAQRQQNQQRSTPATTVVVQQNASGSMEVDPEALIKCTTITPGGIASSMPNNEKLMVTGTDDAIAPKDDPDQIQIDDQAQITIKSAQNKMLADLLEKKSNPPVQVVQMSPQINAPTIQITETGQIVQVKADPNPVIQINDSGIMSQGGQYFQIKNEQGQLIQIKNDQGHIIQLKGDQLQGPLIQINTKNDQGQIMQGGPIMHGGQIIQQGSQIIQGGQIIQQGGQIIQQGGQLIQQGGQIIQGGQIIQQSGQIVQGGQIVQGGQIVQGGQIVQGGQIVQQGQIVQGGQIMQSVIQGQMIQGQVKEKEQMVESVNTDHSYTEPPAKKVKVEEKRENNSPQESVSKTAANLYAALAASALEDEEDLMPPKQEPVDVQQPVIVSGNTENSSVIIQEPILQVQQPTMQVQQPTLQVQQQPTLQMQQPMQHVQQVQQPMLQVQPMDVQNIIASQSGQIIIQEKPIVSQQTQFVQQPMQIIATQGTSQPGLSYITQNIPGNMMQKTIIIVQGPTGGGPLTLTVNNPSGLDEATLNNLIAQATEAIAQQQIIQNSGVIQNAQRVIVSQPTLVNTSQPITMVKTALSQNPPQLTPSQQPIITSQPQPHKAIVNQQPQQIVVTQKQPPALISTTGNNQVIQGNQTLMQGNQQIIAVSNNQQIIMNTPMKPVHRVVQNQRPQTENKTSVIQTSTSGQPLMRQVITRQPVMVGSTKIGEKEVVVSQPIVPEKPTTPAPKPASTPPPASTPAAEETPWICHWRGCGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00323257;
- 90% Identity
- iTF_00323257;
- 80% Identity
- iTF_00323257;