Cfor016815.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- lola
- Assembly
- GCA_964017055.1
- Location
- OZ024815.1:35097680-35099698[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-11 1.6e-08 35.3 0.0 4 43 361 400 358 402 0.91 2 2 2.4 1.6e+03 0.1 1.0 4 20 494 509 493 509 0.90
Sequence Information
- Coding Sequence
- atgggCAACACGGATACACAGACTTACTGTCTACGATGGAACAATCACAAatcgaatctggttgaaatccTCGACGCTCTCATCAAAATGGAGAGCTATGTCGACTGTACGTTAATCGTAGAGGATCAAATCCAATTTAAAGCCCATCGGGTTGTGCTCGCGGCAAACTCTTTGTTTTTTCAAAGTATCCTACAAGACTTTCCCATGGACGATTGCAGTATCATCATTCCGGAAGTTCAAGCATTTGAAATGCGTGCCTTATTGGAGTATATGTACACAGGCGAAGTGAACGTTACCCAAAGTCAAATTCCAAAGATCATGGAAATTGCCGAGAAGCTTGGAGTGAAAGGACTCTTCGATATGACCGACTTCAAGGAGAAGTTCAACAAGGTGGACAAATCAAGTCCGAAAACAGTGTCGCAAGGACCGAGCACGCCACCTGAAAAAGAGGCTGTCGAACATTTACCATCATCGCCGCAAATCACGACCTCAACAACTGTGGccactgctcaaagttgtaCCTCATCGCCACCATACAATTACAAGCCCTCCTTCTCGAATATCTATGCCAAAAATGCCGATCCATCGACGTCGGAACGACAAAATTCTGTACCATGGCCCATTTCATCGCATCTGTCCTCAGCGATACCGAGTGCTGCGGCCGCTGCAGCGGCAATGTTGAGCTCTGTCTACGAATCCGGACCGGATATGAACCCATTGAAAAGGAAGAAGATCTCATCCATGTCGAATATGTTAATGTCACGCGATACACCGATCTTGAGAAATGTTCTGGCCCAAACACATGCTGCCGATTCGTCGCAGCCCATGCCGCTGGTATGTCAACCGATTAAGCAGGAAAGTCGTGTCGAAAAGCTATCGGATAGTTGCAATGGTTCAGATTACAGTGAGAAGAAATACAGTAAGTACGATGAACCCCATTCGCCGTACGGCGATAAATCCTTCGAAGACGACATGGATATGCCCCCGAACTATACCAACGACTCGCGCTTAGCCTCCTACgttccacaacaacaacaacagaaacCCGAATGGAAACGCTACAAACAATACACTCGCAGTGATATCCTTTCGGCCATTGATTGCGTTCGTAATGGTATGAGTGCTTTGCAAGCATCCCGAAAATTCGGTGTTCCATCCCGCACTCTCTACGATAAGGTGAAAAAGCTTGGTATCACAACGGCGCGACCAATGAATCGTACAATCAAGCGCAGTCCCAGCAATGGTGGAGCTCAGAGCGGCTTCCATTTTGGACTGGGTGCCGGCCACCCATACGGCGGTGCCAACGAACAAATTCTTCAACAAATTCACGAGAACAATGAACGGGAAAAGGAACGCGAACATCAATTGCCACCCACGATTCCACATCGTGCAGCCGCTCTCTTGGATCCTGCCTTCTTGCAACAGGCGTTTGAATCGCGCGGCGGAGAGATAGCCGGTCGGGAAGCATTACATGCAATGGCACTGGCTGCTGCTGCGCATGCTGCCGCCAATGGCATTTCAACGAGTCCTGGCACAAACGGCACGGCTCGATCGCCTAGTCCAATTAAATATACATCCGTTCGATCGCATAGTCCGGTAAGTCTTCGCGAACGCGAGCGGGAACGAGAGCGAGAGCGTGAACATGAGAGCGAAAGGGACTATCAACGACACAATGACGATGATGACGAAGATCAAGTGGAAGATCTATCGGTTGGAGCGAGAAAGGATGATTCAAGATCATCGCCAATTTCGCGTTCCAGCCCAATTTCGCATTCCTATCAAAGACAGCAGGAGCAACGACACCAACAAATTCTCCagcagcatcatcatcatcaacagcaAACCGGCGTCATCGTACCGCCAATGACAAAAGTTTCGTCGAACGGTGAAGACTATTCGTCCGAAATGAGACGTTCCATTTCGCCCATGGAGGAATCCGCCTCGGCAAGAGACTAA
- Protein Sequence
- MGNTDTQTYCLRWNNHKSNLVEILDALIKMESYVDCTLIVEDQIQFKAHRVVLAANSLFFQSILQDFPMDDCSIIIPEVQAFEMRALLEYMYTGEVNVTQSQIPKIMEIAEKLGVKGLFDMTDFKEKFNKVDKSSPKTVSQGPSTPPEKEAVEHLPSSPQITTSTTVATAQSCTSSPPYNYKPSFSNIYAKNADPSTSERQNSVPWPISSHLSSAIPSAAAAAAAMLSSVYESGPDMNPLKRKKISSMSNMLMSRDTPILRNVLAQTHAADSSQPMPLVCQPIKQESRVEKLSDSCNGSDYSEKKYSKYDEPHSPYGDKSFEDDMDMPPNYTNDSRLASYVPQQQQQKPEWKRYKQYTRSDILSAIDCVRNGMSALQASRKFGVPSRTLYDKVKKLGITTARPMNRTIKRSPSNGGAQSGFHFGLGAGHPYGGANEQILQQIHENNEREKEREHQLPPTIPHRAAALLDPAFLQQAFESRGGEIAGREALHAMALAAAAHAAANGISTSPGTNGTARSPSPIKYTSVRSHSPVSLREREREREREREHESERDYQRHNDDDDEDQVEDLSVGARKDDSRSSPISRSSPISHSYQRQQEQRHQQILQQHHHHQQQTGVIVPPMTKVSSNGEDYSSEMRRSISPMEESASARD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00322666; iTF_00999504; iTF_00999755; iTF_00793618; iTF_00793453;
- 90% Identity
- iTF_00322666;
- 80% Identity
- iTF_00322666;