Basic Information

Insect: Chloroclystis v-ata
Gene Symbol: -
Assembly: GCA_963691955.1
Location: OY829899.1:7982947-7996856[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 8.9e-05 0.0062 17.4 1.5 1 23 412 434 412 434 0.96

2 20 0.00029 0.02 15.7 1.0 1 20 440 459 440 462 0.94

3 20 0.00071 0.049 14.5 5.6 1 23 481 503 481 503 0.98

4 20 0.0001 0.007 17.2 4.1 1 23 509 531 509 531 0.99

5 20 3.8e-05 0.0026 18.5 5.3 1 23 537 559 537 559 0.97

6 20 5.5e-06 0.00038 21.2 8.4 1 23 565 587 565 587 0.97

7 20 1.8e-06 0.00012 22.7 2.5 1 23 593 615 593 615 0.98

8 20 1.2e-05 0.00086 20.0 5.4 1 23 621 643 621 643 0.97

9 20 4.6e-05 0.0032 18.2 5.4 1 23 649 671 649 671 0.98

10 20 5e-07 3.5e-05 24.4 1.9 1 23 677 699 677 699 0.98

11 20 5.1e-05 0.0036 18.1 7.9 1 23 705 727 705 727 0.98

12 20 1.9e-05 0.0013 19.5 6.4 1 23 733 755 733 755 0.98

13 20 4.2e-06 0.00029 21.5 5.6 1 23 761 783 761 783 0.98

14 20 1.6e-05 0.0011 19.7 5.6 1 23 789 811 789 811 0.96

15 20 1.5e-06 0.0001 22.9 5.0 1 23 817 839 817 839 0.98

16 20 2.4e-06 0.00017 22.3 3.8 2 23 846 867 845 867 0.98

17 20 5.9e-05 0.004 17.9 7.8 1 23 873 895 873 895 0.97

18 20 3.1e-06 0.00022 21.9 6.5 1 23 901 923 901 923 0.98

19 20 0.00035 0.024 15.5 0.3 1 23 930 952 930 952 0.97

20 20 0.18 12 6.9 4.6 1 23 962 984 962 984 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	8.9e-05	0.0062	17.4	1.5	1	23	412	434	412	434	0.96
2	20	0.00029	0.02	15.7	1.0	1	20	440	459	440	462	0.94
3	20	0.00071	0.049	14.5	5.6	1	23	481	503	481	503	0.98
4	20	0.0001	0.007	17.2	4.1	1	23	509	531	509	531	0.99
5	20	3.8e-05	0.0026	18.5	5.3	1	23	537	559	537	559	0.97
6	20	5.5e-06	0.00038	21.2	8.4	1	23	565	587	565	587	0.97
7	20	1.8e-06	0.00012	22.7	2.5	1	23	593	615	593	615	0.98
8	20	1.2e-05	0.00086	20.0	5.4	1	23	621	643	621	643	0.97
9	20	4.6e-05	0.0032	18.2	5.4	1	23	649	671	649	671	0.98
10	20	5e-07	3.5e-05	24.4	1.9	1	23	677	699	677	699	0.98
11	20	5.1e-05	0.0036	18.1	7.9	1	23	705	727	705	727	0.98
12	20	1.9e-05	0.0013	19.5	6.4	1	23	733	755	733	755	0.98
13	20	4.2e-06	0.00029	21.5	5.6	1	23	761	783	761	783	0.98
14	20	1.6e-05	0.0011	19.7	5.6	1	23	789	811	789	811	0.96
15	20	1.5e-06	0.0001	22.9	5.0	1	23	817	839	817	839	0.98
16	20	2.4e-06	0.00017	22.3	3.8	2	23	846	867	845	867	0.98
17	20	5.9e-05	0.004	17.9	7.8	1	23	873	895	873	895	0.97
18	20	3.1e-06	0.00022	21.9	6.5	1	23	901	923	901	923	0.98
19	20	0.00035	0.024	15.5	0.3	1	23	930	952	930	952	0.97
20	20	0.18	12	6.9	4.6	1	23	962	984	962	984	0.98

Sequence Information

Coding Sequence: ATGAATCCAGAACATCACAATATCAATACGGGCGGAGGCCAGCCTCCTGGGAGTTCTGAGTCTCAGAATCAAAGAGTGCAAGctcagcagcagcagcaggTGAGCCTGCCTGCTACAACTTCTGCCACCGATTTACGAGTCAACTCTGCAGCTGTAAACGTTGCTTTGTCCAGCGTTGCGAAGTACTGGGTGTTTACGAACTTATTTCCCGGTCCTATTCCTCAAGTGTCAGTGTACGGTCTTCCTACTGGAACAAGGATTGAAAACGGAAAAGCTGTCCAGGATCTTGGACAAGGCATTCTCAATGGGGACCCAAACATTATTCTTGGACACCACAGTGGGCAGCCACAGGCCTCAGTTTCAGGTGCCCAACAGATACCAGTGTCTCAAATTATTGCCACACAGTCTGGGCAGACACATGATGCACTTGTGGCACACAGTCAACAGCAGGAGATGCAAACCTCCAACACGGTGCAGGCCTCCAGCTCTCACCACCAGGTACCCACTAACCGGGTCGAATTTGTCCAACACCATAACATTGATATGGGACACCACTCTCAACAACAACACATATTGCAACAACAGCTAATGTCTGCAGCTAGACCAGAACACTCAAATCAACAGATTCAACTAACAGTCAGTGAAGATGGCATAGTGACTGTGGTTGAGCCAAGCAGCAGTAAAATGGTGGAGAAGGAAGACATGCACGAAACTATCAAACTGCCATCCGACCACACACTCACCGTGCATCAGCTGCAGCAGATAGTTGGACAACAAGTGCTCGACAGCGTGGTGCGCATCGAGCAGGCGACGGGCGAGCCGGCCAACATCCTCGTGACGCACAACGCGGACGGCACCACCTCCATCGAGGCCAGCGCCACGGACCCGCTCGCTATAGTCAAGGACGAGAAGACGCACGCCAAGATCGACGCGCAGCAGTTCGCGATACCCACGGACATCAAGGAGATGAAGGGCATTGATTTGAAGGCTGTAAACGCAATGAATATGGAAGGCGCAGTTGTGAAGATATCGACGGGTGCTCCGGAACACGACATGCACGCGATGTACAAAGTGAACGTTGAAGATCTATCGCAGCTGTTGGCGTATCACGAAGTCTTCGGCAAAATGGGACCCGACGGCCAACCTCAGGCCAAAGTGGCTGTAGGTGATGTAGAAATAGAAGTGCCAGGAACCAGCTCCGGTATGTCAGAAGCGGAGAACTCGCCCGGCCACCACGCATGCGATATTTGCGGGAAAATATTCCAATTTCGGTACCAGCTTATTGTACACagACGTTACCACGGCGAGACCAAGCCTTTCACGTGCCAAGTTTGCGGCACCTCATTCGCGAACCCCGTAGAGCTCTCTCGGCACGGGAAATGCCATCTCGCAGGTGACCCGGCCGAAAGACACGCAAAGAGAATGGCCCAAGACAAACCTTATGCATGCTCCACTTGCCATAAAACATTCTTGCGTAAGGAGCACCTAAACAACCATGTACGCAGTCACACGGGAGAAACTCCATACAGATGCGAATTTTGCGCGAAAACGTTCACTCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACCAGGAAGGAACACTTCATGAACCATGTCATGTGGCACACTGGTGAAACTCCACACCACTGTACAATTTGTGGGAAGAAGTATACTCGGAAGGAACATTTGACGAACCATATGAGGTCGCACACTAACGATACCCCGTACCGGTGTGACCTCTGCGGCAAATCCTTCACGAGAAAAGAGCATTACTCCAACCACATACTTTGGCACACTGGCGAAACCCCGCATCGGTGCGACATCTGTTCCAAAACCTTCACACGGAAAGAGCATCTACTGAACCACGTGCGGCAGCACACGGGCGAGTCCCCGCACCGCTGCAACTACTGCGCCAAGTCCTTCACGCGCCGCGAGCACCTCGTCAACCACGTGCGCCAGCACACCGGCGAGACGCCCTTCCAGTGCGGCTACTGCCCCAAGGCCTTCACGAGGAAGGACCATCTAGTGAACCACGTGCGCCAACACACGGGCGAGTCTCCGCACAAGTGCTCATTCTGCACGAAGTCGTTCACTCGCAAGGAGCACCTCACGAACCACGTGCGGCAGCACACGGGCGAGTCGCCGCACCGCTGCAACTACTGCGCCAAGTCCTTCACCAGGAAGGAACATCTCACCAACCACGTCAGACAGCATACGGGCGAAACGCCACACAAGTGCACGTATTGCCCGCGCGCGTTTTCGAGAAAGGAGCATCTGAACTCGCATCTCCGCCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACTGTAGCAAGACCTTCACCAGGAAGGAGCATCTCGTCAACCACGTGCGGAAACACACCGGCGAAACACCGTTCAAGTGCACGTTCTGTACGAAGTCGTTCTCGCGCAAGGAGCACCTAACGAACCACATAAACGTGCACACCGGGGAGACGCCGAACAAATGCCCCTTCTGCACTAAAACATTCTCTAGGAAGGAACATCTCACCAACCATGTCAGAATACATACTGGCGAATCACCTCATCGCTGTGAATTCTGCCAGAAAACATTCACTCGTAAGGAACACCTGACGAACCACTTGAAGCAGCACACGGGTGGCGCGGCGCACACCTGCAAGGTTTGCCAGAAACCATTCACGAGGAAGGAACATTTACAAACGCATATGAGATACCACAGTTGTGGCGATCGGCCGTACAGTTGCGGTGAATGCGGCAAGTCCTTCCCGCTCAAGGGCAACCTGATGTTCCATGAGCGGTCACACAACAAGGCGGGGTCGGGACCGAGACCTTTCCGGTGTGATGTCTGTTCAAAGGACTTTATGTGTAAAGCTCATTTACTAACACATCGGCAAGTGCACACCGATGCGGGTGAAGAAGCCTCCTCTGAAATGCAGACTGACAATGACGAGTGTATGACCACCACACCCGATTGCACCAACAAGTGTATAAAAGTAGAGCTTGACACGTCGGAGCAAAGATCATCAGTGGACAATGGACCAACTGAAACAATTGTTGTACAGCCTGCTCTCGATTCTCCAAATCATATAGCCCAATCCAATACAGTAATGCAGATAAGTGGtcaaCAGGTGCGAGTGCCATCATCTAGCCCAGCAAGTAATGTAACCACAGCCTCCTTTACACACCCAACTAATCAGAACCATCCAGGCACTGCAATTGCTCATCACCCAGTCACTGTGAATTACTAG
Protein Sequence: MNPEHHNINTGGGQPPGSSESQNQRVQAQQQQQVSLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKAVQDLGQGILNGDPNIILGHHSGQPQASVSGAQQIPVSQIIATQSGQTHDALVAHSQQQEMQTSNTVQASSSHHQVPTNRVEFVQHHNIDMGHHSQQQHILQQQLMSAARPEHSNQQIQLTVSEDGIVTVVEPSSSKMVEKEDMHETIKLPSDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNADGTTSIEASATDPLAIVKDEKTHAKIDAQQFAIPTDIKEMKGIDLKAVNAMNMEGAVVKISTGAPEHDMHAMYKVNVEDLSQLLAYHEVFGKMGPDGQPQAKVAVGDVEIEVPGTSSGMSEAENSPGHHACDICGKIFQFRYQLIVHRRYHGETKPFTCQVCGTSFANPVELSRHGKCHLAGDPAERHAKRMAQDKPYACSTCHKTFLRKEHLNNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLTNHMRSHTNDTPYRCDLCGKSFTRKEHYSNHILWHTGETPHRCDICSKTFTRKEHLLNHVRQHTGESPHRCNYCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCNYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNSHLRQHTGVTPHACSYCSKTFTRKEHLVNHVRKHTGETPFKCTFCTKSFSRKEHLTNHINVHTGETPNKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGGAAHTCKVCQKPFTRKEHLQTHMRYHSCGDRPYSCGECGKSFPLKGNLMFHERSHNKAGSGPRPFRCDVCSKDFMCKAHLLTHRQVHTDAGEEASSEMQTDNDECMTTTPDCTNKCIKVELDTSEQRSSVDNGPTETIVVQPALDSPNHIAQSNTVMQISGQQVRVPSSSPASNVTTASFTHPTNQNHPGTAIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00704247;
90% Identity: iTF_00701278;
80% Identity: -