Cten011336.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754304.1:9397634-9399696[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00069 2.8 8.3 0.1 20 51 16 47 4 49 0.86 2 8 0.036 1.5e+02 2.8 0.2 25 49 78 101 68 105 0.78 3 8 0.78 3.2e+03 -1.5 0.1 26 45 192 211 189 217 0.87 4 8 0.14 5.8e+02 0.9 0.1 24 51 333 360 317 361 0.79 5 8 0.0013 5.5 7.4 0.0 23 43 422 442 416 449 0.88 6 8 0.015 61 4.0 0.4 26 48 483 504 475 508 0.87 7 8 0.0002 0.82 10.0 0.1 22 50 510 538 505 542 0.92 8 8 0.032 1.3e+02 3.0 0.0 25 48 600 623 593 626 0.85
Sequence Information
- Coding Sequence
- ATGAAAACGACAAAAGATACTCACAAACATGAAGGCAAGACAGGAAAATCTAAGAAAAGCCTTCAATGTGAAATttgtaaatcaattttaaaatcagaatattatttgaagaaaCACAAGGAAAGCAGACATCCTGAGCATCCACGGAACTACATCTGTGACTATGACGGAAAAGTGtttgcaaacaaaaattatttaaggatTCATATGGAAAGGCATCAACAAGAGATTCTGACATGCAATATATGCATGAAAGCGTACAATTCAAAGATCATTTTGAAGAGACACTTGCTCAGTCATCTTGAAAAGTATCCATGTAAGGAATGTGGAGCTACATTTAGTCACAAAACACTCCTCAACAATCACATATCAATCCATACGAAGGAATTTACAATCAAGTGTAAATACTGTACTAGAATGTTCAAAAATACAACATCCAGAaacaatcatcatcaaattgcACATAAAAATAAGGAGGAACTGCATTTTAAATGCAACAAGTGCAACGTATTCTTCGAGACAAAAGAGGACTTGAGAATCCATagctttattcattttaatggcGAAATAAAGACTTGCTTTCATTGTGATCAGATCTTTAAAACGACGagattattaaatattcatctaCAGAAACATTCgaataagaaatttcaatgcGAGTCATGCCtggaaaatttcacatttaaaagtGGCTTAACGAAGCACAAAAGATTAAATAGATGTAAAGGTCCACCAACGACTTTTGATGATGATCAGATGACAGAAGaggaaatcaataaaattgccAAGGAACAGCTAGAGTCCATATCATATAGTCGACAGAAAGAAGTACCTGAACCAGATTTGATTATTGACGATAAAAACGATGAAGATGTGCCTGAACGAGAAGTTGAAAGTTCGATAGAAAGTGATCATGAGGAACAGACTACGACAAATGTGCAGGAAGAAGAAGCACCACCATTAACAGTGAAACGATTTGGAAGAGCACATAAAACTTATATCTGTGATAATTGTGGCGATTCCATTAAATACAGAAAGAATTTAGAATTGCACATGAAGAATAATCATCTAAGGAAGAACTATAAATGCTCAAGCTGTTCGGAAGtctttaaaagtaaaataagcTATAAAGCCCATTCTCTGCAAGCGCACGGAATTAAACAAAGAATAGctgtcgaaattttcaaatgtaatGTCTGCGACAAGAAGTTTGACATAAAAAGCATCTATGAAGCACATAAATTGTCACATGATGATCTCCGTCCACAAGTCTGTAAAATATGTAATGCATCATTCAAAAGTATTGGAAACCTTAAAAGACATAATCTCATCCATATTGACgagagaaattatttatgtgaTGCATGCTCAAAATcctttaaaagtgaaaatgcaCTAAAGATTCACAAGAATTCTGTTCATGCTTCAGTGAAGGTTTACGTGAGCTGTCCACACTGTAAGATTATTCTACAAGAAAAGAACTTGAAGATTCACATCCATAATCAGCATACAGAAGAAGGTCAAAAGAAGCCATTTACATGCAGTGTCTGTAGCaagacatttaaaaatgaatttctccTCAAAAGACATTTCGAGCATCTCCATTTCAGTTCCAATCGAGGAATTATCTACAATTGTGAGCAGTGTGGACTGCCTTTTAATAGACAAAGAGATTTAAGGATACATTCATTTGAGCACTTTGAAGGAACAATTCATACTTGTTTTTGTGgtaaaaagtttaagaacAAACGACTACTTTTAATTCATTCGACTGTCCACGCTTCCGATACTAAGTTTCAATGCAATTTATGTGATGCTATTTTCAAGACGTCTGGTGGACGAAGAAAGCACATAGcaaaacatcataaaacagCATTAAATGTTGAGGATTTAGTGATAAAGTATGATGAAGTCACGGAGCATGTTTCtacattttaa
- Protein Sequence
- MKTTKDTHKHEGKTGKSKKSLQCEICKSILKSEYYLKKHKESRHPEHPRNYICDYDGKVFANKNYLRIHMERHQQEILTCNICMKAYNSKIILKRHLLSHLEKYPCKECGATFSHKTLLNNHISIHTKEFTIKCKYCTRMFKNTTSRNNHHQIAHKNKEELHFKCNKCNVFFETKEDLRIHSFIHFNGEIKTCFHCDQIFKTTRLLNIHLQKHSNKKFQCESCLENFTFKSGLTKHKRLNRCKGPPTTFDDDQMTEEEINKIAKEQLESISYSRQKEVPEPDLIIDDKNDEDVPEREVESSIESDHEEQTTTNVQEEEAPPLTVKRFGRAHKTYICDNCGDSIKYRKNLELHMKNNHLRKNYKCSSCSEVFKSKISYKAHSLQAHGIKQRIAVEIFKCNVCDKKFDIKSIYEAHKLSHDDLRPQVCKICNASFKSIGNLKRHNLIHIDERNYLCDACSKSFKSENALKIHKNSVHASVKVYVSCPHCKIILQEKNLKIHIHNQHTEEGQKKPFTCSVCSKTFKNEFLLKRHFEHLHFSSNRGIIYNCEQCGLPFNRQRDLRIHSFEHFEGTIHTCFCGKKFKNKRLLLIHSTVHASDTKFQCNLCDAIFKTSGGRRKHIAKHHKTALNVEDLVIKYDEVTEHVSTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320899;
- 90% Identity
- iTF_00320899;
- 80% Identity
- iTF_00320899;