Cten003323.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754302.1:36243176-36246103[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.49 2e+03 -0.8 0.0 21 31 38 48 31 65 0.87 2 8 0.0009 3.7 7.9 0.0 18 46 290 319 286 321 0.84 3 8 0.00068 2.8 8.3 0.1 21 44 322 345 319 349 0.91 4 8 0.0049 20 5.6 0.1 21 45 350 374 346 382 0.90 5 8 0.00043 1.8 9.0 0.1 23 47 439 463 427 469 0.84 6 8 0.0045 18 5.7 0.0 22 46 494 518 489 524 0.85 7 8 0.038 1.6e+02 2.7 0.0 21 43 521 543 517 548 0.89 8 8 0.00072 3 8.2 0.1 21 45 549 573 545 579 0.91
Sequence Information
- Coding Sequence
- ATGCTGGCGAATAATACACAGCAGAAGCAGATAATTCTTCCTGTATATCCAGTGATTATATCgggacaaaaaattaatacgtCTGGAGCTACTCCGACAGTTATAGGAACAATAGAACAACCTCAAAAATGTCATCTGTGCCAAAAGGATTTTCCATCAATGCTTGCATTCCAAAATCATGTAAAGGAACAGCATTTAgacggaaaaatttatagaaatataATTGCCGTATCGACAGCCAGTATAAATCCCGTAACTACAATGATTCCAGCACAAATGGCAACTGTGCAACATCATTATCAAGTAGCAGCCAATAATGCTGTAAAACTCGAAAAGGACTTCCAAACGCATAAAAGCCAAACAATTTTACACACATCTGATGTCTTGAAGCATGCATATCAGAGTGACTTTGCCACAGTTAATGTGACACCTGTTATTCAGCACATTCAAATTCAACAGCAACAGGCGCAGCATAGAGATaaggaaaaatcaaatataattCAAGTTGTGAAACAAAATCCCGTCGAATATCATATACAGCAGCAAGAGCATGCAGCTATGGTTGTGGCACAAATGAATCAAAAGTCTGGAATTACGAGTCCATTTTTAAGTAgcacaataaaatatgaacttCATGGACAGCCTGTGCAGCTTGTAACCGAAGTATATCCACAAATGATAACCGAGACAGCAAAATCAGATGACATGAATTCTCAGTCGTCAGTATCCTCCCCAGCATCCTCAATTAATATCCAAAACTCCACATCTGGACCAGTTCTAAGTAATGGCGAAACGATGGAGAAGCAGCACAAATGCCTCATATGTGATAAATTCTTTACAACtgttgcaaatttaaatttacatcttAGAAGTCACTCTGGTGATAAGCCATATAAATGTACTATTTGTGGCAAAGGCTTCATTCAAAGCAACAATTTATCAACtcacatgaaaattcataCTGGCGAAAAGCCTCATGAATGCTCGATCTGTGGCAAACGATTTTCGCAATCAAATAATCTTAAGacGCATTATCGAACACATACTGGGGAACGTCCCTATTCTTGCAGTCTTTGCGACAAGTCATTCAatcaaaagaataatttaacgACTCATCTGCGAACCCATTCAGACTACCATCCATCAAGTTGTAGTATGTGCAAGCAAACATTCTCATCATTCAATGAGCTATTTAATCACATGAGACAGCATACTGAGGAGAAGAAACCACACATTTGTACTATACCAGGATGCAATAAAGTATTCAATAGCCAAAATGATCTCACTGAACATACGAAACAGCACACGAATCCTAAGCCATACAAATGTGATATTTGTCAGAAACAATTTACACAATCGAACAATTTAAAGACTCATATCAAAACCCACATATATCAGGATCCATTCAAATGCACAATGTGTACTAGATCATTTCAGGATCAGGAGGAATTTCAAATGCATGTTCGTGTGCACACTGTGGACAAACCTTACGAGTGTACATActgcaaaaagaaatttattcaaagtAATAATTTGAAGACGCATCTCCGAACACACACAGgtgaGAAGCCGTACCGATGTGGTGTATGTGGCAAGTCTTTTAATCAAAAGAATAACTTGAATACGCATAATCGTGTACATACTGGCGAAAGGCCATTCGAATGTCATCTGTGTGATAGACGCTTTAATCAAAGcaataatttaaataaacatttaaaaacgCATGGCCAAGAGAAGGAAATACCGAAGAGTATGGAGAGTGAGATGGAGAAGTTGATGAACACAGTGATTATGACACAACAAGACTAA
- Protein Sequence
- MLANNTQQKQIILPVYPVIISGQKINTSGATPTVIGTIEQPQKCHLCQKDFPSMLAFQNHVKEQHLDGKIYRNIIAVSTASINPVTTMIPAQMATVQHHYQVAANNAVKLEKDFQTHKSQTILHTSDVLKHAYQSDFATVNVTPVIQHIQIQQQQAQHRDKEKSNIIQVVKQNPVEYHIQQQEHAAMVVAQMNQKSGITSPFLSSTIKYELHGQPVQLVTEVYPQMITETAKSDDMNSQSSVSSPASSINIQNSTSGPVLSNGETMEKQHKCLICDKFFTTVANLNLHLRSHSGDKPYKCTICGKGFIQSNNLSTHMKIHTGEKPHECSICGKRFSQSNNLKTHYRTHTGERPYSCSLCDKSFNQKNNLTTHLRTHSDYHPSSCSMCKQTFSSFNELFNHMRQHTEEKKPHICTIPGCNKVFNSQNDLTEHTKQHTNPKPYKCDICQKQFTQSNNLKTHIKTHIYQDPFKCTMCTRSFQDQEEFQMHVRVHTVDKPYECTYCKKKFIQSNNLKTHLRTHTGEKPYRCGVCGKSFNQKNNLNTHNRVHTGERPFECHLCDRRFNQSNNLNKHLKTHGQEKEIPKSMESEMEKLMNTVIMTQQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319909;
- 90% Identity
- iTF_00320887; iTF_00319909; iTF_00320228;
- 80% Identity
- iTF_00320887;