Crip003871.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01027424.1:15753-19779[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.5 2.4e+03 -1.2 0.0 22 31 39 48 36 65 0.88 2 8 0.00033 1.6 9.0 0.0 18 49 291 323 287 326 0.82 3 8 0.00053 2.5 8.4 0.0 21 44 323 346 320 351 0.91 4 8 0.0039 18 5.6 0.1 21 45 351 375 347 383 0.90 5 8 0.00035 1.7 8.9 0.1 23 47 440 464 429 470 0.84 6 8 0.0036 17 5.7 0.0 22 46 495 519 490 525 0.85 7 8 0.023 1.1e+02 3.1 0.1 21 43 522 544 518 549 0.89 8 8 0.00055 2.6 8.3 0.1 21 45 550 574 545 580 0.91
Sequence Information
- Coding Sequence
- ATGCTGGCGAATAATACACAGCAGAAACAGATTATTCTTCCTGTATATCCAGTGATTATATCgggacaaaaaattaatacgtCTGGAGCTGGTCAGACTGTCATAGGAACAATAGAGCAAcctcaaaaatgtcatttgtGCCAAAAGGATTTTCCATCAATGCTCGCATTCCAAAATCATGTAAAGGAACAGCATTTAGACGGAAAAATGTATAGAAATATAATTGCCGTATCAACTGCTAGTATAAATCCCGTAACTACAATGATTCCAGCACAAATGGCAACTGTGCAACATCATTATCAAATAGCAGCAAATAATGCTGTAAAACTCGAAAAGGACttccaaaataataaaagccaAACAATATTACACACATCTGATGTGTTAAAGCAAGCATATCCGAGTGACTTCACCACAGTCAATGTGACACCTGTTATACAGCACATTCAAATTCAACAGCAACAGTCACATCATCACAGAGATAaggaaaaatcaaatattcttcaaattgTAAAACAAAATCCTGTCGAATATCATATTCAACAGCAAGAGCATGCAGCTATGGTTGTGGCACAAATGAATCAAAAGTCTGGAATTTCGAGTCCATTTTTAAGTAgcacaataaaatatgaacTTCATGGACAGCCGGTTCAGCTTGTAACAGAAGTATATCCACAAATGATAACCGAGACAGCAAAATCAGATGACATGAATTCACAGTCGTCAGTGTCCTCCCCAGCATCCTCAATTAATGTCCAAAATTCTACATCTGGACCAGTTCTAAGTAATGGCGAAACGATGGAGAAGCAGCACAAATGCCTAATATGTGATAAATTCTTTACGActattgcaaatttaaatctacATCTTAGAAGTCATTCTGGTGATAAGCCCTACAAATGTACAATTTGTGGTAAAGGCTTCATTCAGAGCAACAATTTATCAACTCACATGAAAATTCATACTGGCGAAAAGCCCCATGAATGCTCGATTTGTGGCAAGCGATTTTCGCAATCAAATAATCTTAAAacaCATTACCGAACTCATACTGGCGAACGTCCCTATTCCTGCAGTCTCTGCGACAAGTCATTTAATCAAAAGAACAATTTAACGACTCATCTGCGAACCCATTCAGACTACCATCCATCAAGCTGCAGTATGTGCAagcaaacattttcatcattcaatgAGCTATTTAATCACATGAGACAGCATACTGAGGAGAAGAAACCACACATTTGTACTATACCAGGATGCAATAAAGTATTCAATAGCCAAAATGATCTCACAGAACATACAAAGCAGCACACAAATCCTAAGCCATACAAATGTGATATATGTCAGAAACAATTTACACAATCGAACAATTTAAAGACTCATATCAAAACCCACATATATCAGGATCCATTTAAATGCACGATGTGCACTAGATCATTTCAGGATCAAGAAGAATTTACAATGCACGTACGTGTGCACACTGTAGACAAACCTTACGAGTGTACATACTGCAAAAAGAAGTTCATTCAAAGTAATAATTTGAAGACGCATTTACGAACACATACAGgtGAGAAGCCGTACCGTTGTGCTGTATGTGGAAAGTCTTTTAATCAAAAGaataatttaaatacgCATAATCGTGTACATACTGGCGAAAGACCATTCGAATGTCATCTTTGTGATAGGCGCTTTAATCAAAGcaataatttaaataaacatttaaaaacgcATGGCCAAGAGAAGGAAATACCGAAAAGTATGGAGAGTGAGATGGAGAAGTTGATGAACACAGTGATTATGACACAACAAGactaa
- Protein Sequence
- MLANNTQQKQIILPVYPVIISGQKINTSGAGQTVIGTIEQPQKCHLCQKDFPSMLAFQNHVKEQHLDGKMYRNIIAVSTASINPVTTMIPAQMATVQHHYQIAANNAVKLEKDFQNNKSQTILHTSDVLKQAYPSDFTTVNVTPVIQHIQIQQQQSHHHRDKEKSNILQIVKQNPVEYHIQQQEHAAMVVAQMNQKSGISSPFLSSTIKYELHGQPVQLVTEVYPQMITETAKSDDMNSQSSVSSPASSINVQNSTSGPVLSNGETMEKQHKCLICDKFFTTIANLNLHLRSHSGDKPYKCTICGKGFIQSNNLSTHMKIHTGEKPHECSICGKRFSQSNNLKTHYRTHTGERPYSCSLCDKSFNQKNNLTTHLRTHSDYHPSSCSMCKQTFSSFNELFNHMRQHTEEKKPHICTIPGCNKVFNSQNDLTEHTKQHTNPKPYKCDICQKQFTQSNNLKTHIKTHIYQDPFKCTMCTRSFQDQEEFTMHVRVHTVDKPYECTYCKKKFIQSNNLKTHLRTHTGEKPYRCAVCGKSFNQKNNLNTHNRVHTGERPFECHLCDRRFNQSNNLNKHLKTHGQEKEIPKSMESEMEKLMNTVIMTQQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319909;
- 90% Identity
- iTF_00321248;
- 80% Identity
- iTF_00319909;