Cten008836.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963573255.1
- Location
- OY754303.1:35231161-35234239[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.15 3e+03 -2.6 0.1 159 193 51 89 36 111 0.58 2 3 9.7e-109 2e-104 349.3 39.3 1 299 193 477 193 478 0.95 3 3 0.077 1.6e+03 -1.7 3.8 218 244 504 530 480 552 0.48
Sequence Information
- Coding Sequence
- atggATGAAATCAATTATAATCCATTGCGAATTATTGAGGATGAAATACCATCGAATAGTGATAAGAGTACTGATAATGATTCGAATGGAGAAATGTTTGATTTTAGTGCTAGTGACATTGAGGAGTTGGAAGGCTATGGAAGTAGTAAAACAGACGAGTTTGACAATCTGcaaaataaacaaagaaaTAGCTTGTTAATAATTGAAGACAAAGATCTGATAATGgacacaaataataataattgcgATAGCATTCATCGACTATCATTGCAAGTTGAGAGTGGCGACAGCGATAGTCTTGTAATGACAAACGAGGCAGTTAATCGTACAATCATACGAATCGGTTCGAATTGTATTGATTTCGGTGACTCAAATGTCAATGAATTTAATACACAGccacaacagcaacaacaaatagAGTCGATACACGAAGTAATCAATCATAAGATAAATGATGATTATGTTGAGCAAATTGAGGATGATGAAGAAAGCTTGCCCGACGATGttaatgaaagtgaaaatgttAACAGCAGCGATCAAGTTATAGTTAATATTCTAGggcaaataaatgaaataGCAGAAGCACGTTTAGCAGCAAAGCGTCAAGCAAGAGCAGAGGCGCGTGAAATTCGTATGAGAGAGCTGGATCGTCAACAGAAGGAAATAGAACAAAATGCAGATCGAGCATATGATATGCAGCAATCGGAAGCATTTTCAACGCCACGTTCTCGATTGACGGTAAATAATCATGTAGGTGTGCGAGGCAACTCAATGTCGTCACGACGTAGTAGTGAGGATTCTTTGGAGGAAGAGGGACGGAGTTTGAGGGATCTCAGGCATGAACTGAAGgaTGCAGAAGAGCGCTTCCGAAAAGCAATGATCACAAATGCACAGCTCGATAACGAACGTTCCTCACAAGCATATCAAATAGATTTACTTAAAGATAAATTAGAAGAAATGGAAGAATCATATGCACAACTACAGCGAGAACATCGAGAAAAGACTCGAGCACATGATGCAATGAAAAGGCAAAATGATAAGCTCACCGAGGAATTAAAACTCGTTCAAGGCCAATTGAATGAGCGCGACACACTAATTGCTGAATATGGTTTAGTTATTATAATAGTGGAAAATGAGGATGGCTCTGATGCCAAACGTGTTCTAGTCTCAAATGAAAATGCTCAACTTTTGAGTACAGTAGAAGGATCAATAGATGTAcgactcaaaaaattcacagaGGAGAAACAAGAATTACAGAATGAAGTGCAAAAACTCCAACAGCAGCtaaatgacataaaaacaCGTGGACGTAGATCAAGTTCTGTCAATGGGGTTATTGATGATGACGACTATGAGGATGCGCAACGCGAAGCTAATAAAACCATAAATGACTATAAATATCGATTACAAAAAGCTGAACAAGAAATTGCTAGTCTTCAAGCAAGCTTGGCACGTTCAGAGACTCAGGTTATTCGTTATAAAAGTACAGCCGAGGCAGCTGAGAAGGCGGAAGCTGATCTTAAAGTTGAAAGAAGGAAACTTCAAAGAGAGAATCGTGAAGCTACGGAGCGCCTTGAGGAGCTGGAGACCTCAAATAATCATCTATTGAAACGATTGGATAAGTTAAAGAATGCCAAAAGTGCTCTACTCAAAGATCTTTGA
- Protein Sequence
- MDEINYNPLRIIEDEIPSNSDKSTDNDSNGEMFDFSASDIEELEGYGSSKTDEFDNLQNKQRNSLLIIEDKDLIMDTNNNNCDSIHRLSLQVESGDSDSLVMTNEAVNRTIIRIGSNCIDFGDSNVNEFNTQPQQQQQIESIHEVINHKINDDYVEQIEDDEESLPDDVNESENVNSSDQVIVNILGQINEIAEARLAAKRQARAEAREIRMRELDRQQKEIEQNADRAYDMQQSEAFSTPRSRLTVNNHVGVRGNSMSSRRSSEDSLEEEGRSLRDLRHELKDAEERFRKAMITNAQLDNERSSQAYQIDLLKDKLEEMEESYAQLQREHREKTRAHDAMKRQNDKLTEELKLVQGQLNERDTLIAEYGLVIIIVENEDGSDAKRVLVSNENAQLLSTVEGSIDVRLKKFTEEKQELQNEVQKLQQQLNDIKTRGRRSSSVNGVIDDDDYEDAQREANKTINDYKYRLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEADLKVERRKLQRENREATERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319683;
- 90% Identity
- iTF_00319683;
- 80% Identity
- -