Crip003247.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_001014505.1
- Location
- JXPV01013086.1:1446-19125[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.29 5.5e+03 -3.6 0.1 161 192 53 84 38 108 0.59 2 3 7.2e-108 1.4e-103 346.4 38.1 1 299 201 485 201 486 0.96 3 3 0.055 1e+03 -1.2 3.1 220 244 514 538 489 560 0.47
Sequence Information
- Coding Sequence
- ATggatgaaatcaattttaatccattGCGAATTATCGAGGATGAAATACCATCAAATAGTGATAAGAGCACTGATAATGATTCGAATGGAGAAATATTTGACTTTAGTGCCAGTGATATTGAAGAGTTGGAAGGTTATGGAAGTAGTAAAACAGATGAGTTTGAAAGTCTGCAAAGTAAACAAAGAAATAGCTTATTGATAATTGAAGACAAAGATCTGATAATGGAcagaaatgaagattttaataataataattgcgATAGCATTCATCGACTATCATTGCAAGTCGAGAGTGGCGATAGCGATAGTCTCGTAATGACAAACGAGGCAGTTAATCGTACAATCATACGAATAGGTTCGAATTGTATCGATTTCGATGACTCAAATGTCAATGATATTTATATACAGccacaacagcagcaacaacaactaGAGTCGATACACGAAGTaatcaatcataaaataaatgatgattatgTTGACGATGTTGAGCAAATtgaggatgaagaagaaagcGTTCCCGACCAAGCTCATGAAAGTGATGATATTAACAGCAGCGATCAAGTTATAGTTAATATTCTAGggcaaataaatgaaataGCAGAAGCACGTTTAGCAGCAAAGCGTCAAGCAAGAGCAGAGGCGCGTGAAATTCGCATGAGAGAGCTGGATCGTCAACAGAAAGAAATAGAACAAAATGCAGATAGGGCATATGATATGCAACAATCGGAAGCATTTTCAACACCACGTTCTAGATTGACGGTAAACAATCATGTAGGTGTGCGAGGCAATTCAATGTCGTCGCGACGAAGTAGTGAAGACTCTTTGGAGGAAGAGGGAAGGAGTTTGAGGGATCTGAGGCATGAACTGAAgGATGCAGAAGAGCGCTTCCGAAAGGCAATGATTACAAATGCCCAGCTCGATAATGAACGTTCCTCACAAGCATATCAAATAGATTTACTTAAAGATAAATTAGAAGAAATGGAAGAATCATATGCACAGCTACAACGAGAACATCGAGAAAAGACGCGAGCACATGATGCAATAAAAAGGCAAAATGATAAGCTCAGCGAGGAATTAAAACTCGTTCAAGGTCAATTGAATGAGCGCGACACATTAATTGCTGAATATGGTTTAGTTATTATAATAGTGGAAAATGAGGATGGCTCTGATGCCAAACGTGTTCTAGTCTCAAATGAAAATGCTCAACTTTTGAGTACAATAGAAGGATCAATAGatgtacgactcaaaaaattcacagaGGAGAAACAGGAATTACAGATTGAAGTGCAGAAACTCCAACAGCAGctaaatgacataaaaacaCGAGGACGTAGATCAAGTTCTGTCAATGGAGTTATTGATGATGACGATTTTGAGGATGCTCAACgcgaagcaaataaaacaataaatgacTATAAATATCGATTACAAAAAGCTGAACAAGAGATTGCTAGTCTTCAAGCGAGCTTAGCACGTTCAGAGACTCAGGTTATTCGTTATAAAAGTACAGCTGACGCAGCTGAAAAGGCAGAAGCAGATCTTAAAGTTGAGCGAAGGAAACTTCAAAGAGAGAATCGTGAAGCTACAGAGCGCCTTGAAGAGCTGGAGACCTCAAATAATCATCTATTGAAACGATTGGATAAGTTAAAGAATGCCAAAAGTGCTCTACTCAAAGATCTTTGA
- Protein Sequence
- MDEINFNPLRIIEDEIPSNSDKSTDNDSNGEIFDFSASDIEELEGYGSSKTDEFESLQSKQRNSLLIIEDKDLIMDRNEDFNNNNCDSIHRLSLQVESGDSDSLVMTNEAVNRTIIRIGSNCIDFDDSNVNDIYIQPQQQQQQLESIHEVINHKINDDYVDDVEQIEDEEESVPDQAHESDDINSSDQVIVNILGQINEIAEARLAAKRQARAEAREIRMRELDRQQKEIEQNADRAYDMQQSEAFSTPRSRLTVNNHVGVRGNSMSSRRSSEDSLEEEGRSLRDLRHELKDAEERFRKAMITNAQLDNERSSQAYQIDLLKDKLEEMEESYAQLQREHREKTRAHDAIKRQNDKLSEELKLVQGQLNERDTLIAEYGLVIIIVENEDGSDAKRVLVSNENAQLLSTIEGSIDVRLKKFTEEKQELQIEVQKLQQQLNDIKTRGRRSSSVNGVIDDDDFEDAQREANKTINDYKYRLQKAEQEIASLQASLARSETQVIRYKSTADAAEKAEADLKVERRKLQRENREATERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320598;
- 90% Identity
- iTF_00320598;
- 80% Identity
- -