Cten007624.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- rfx7.L
- Assembly
- GCA_963573255.1
- Location
- OY754303.1:23351841-23360504[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.3e-33 4.3e-29 101.1 0.0 3 77 207 281 205 283 0.97 2 3 1.9 9.7e+03 -2.5 0.0 21 44 706 729 695 735 0.73 3 3 0.093 4.8e+02 1.7 0.0 24 41 969 986 966 990 0.87
Sequence Information
- Coding Sequence
- ATGACGTTTCAACCGTGGAAGCaagcttttaataatttaccaaatcaattttatcgtaataataaaaatgatagcAGTGATTCGGCTTCATCGACATTTAATagcaacaaaatgaaaaatggtgACATTGAAATTTCTGGGCCGTCATCGGCTTCAAATCTGAACATTTTGTCACCGCAATCGTCGACATCAACATCCCATCcatttgatttgaataatgAGCACTACCAATCACCAGCTTCCACAAATAATGTTCTAGTTGAAAATGAACCGGTCGTGGGAAGTAACAAAGGTTCCATTAATggtacaaaattttccatcttttcacaattaattaatttaaataaaatcaatgcCTTTGACAACCTACTGCTCAATGCATCCATGAGTCTAGATGACGATGACTTTAGTTGTGATAAAAGACAAGGAATGAGAAAGCTGATGGAACAAGCAATCagCGATGAGGCAAAACAGCAAATTGCATTTATTCTGGAAAAGATTTCAACATTACGTCCAGCCGAAAAACTTCTTTTGTACCTAAAAATGCCTGGTGGTCATTGTGAAGTCGATCCGCTGAAACAATCACAGAATCCTCTTGGATCACGTTCCGAGATATCTCACACTATCAATTGGGTTCGTTCACATCTTGAGCAAGATGATAAAGTTTCGATTCCGAAACAAGAAGTTTACGAGGACTATGTGACGTTTTGTgcaaaaattaacataaagcCCTTGTCAACAGCTGATTTTGGAAAGGTGATGAAGCAAGTTTTTCCCGATATACGCCCACGTCGTTTAGGAACAAGAGGTCATTCACGATATTGTTATGCTGCGATGCGAAAGGCCACAAAACTCAGTGCACCCCATCTCCCTGAAATTCGTAATAACGAAGCAACGTCAAAGAAAAACAGTAATAATGGAAGTGGAACTGAAAATGAGTCAACATGGaaagtgattaaaaattgGTCTGAAAATTTGCTCGGCAATCAATTTGAGTCATTGGATGATCTAGCAGAGCACATTTctcataataatttgaatattccATCAATATCATCATCTACCTCAAAGCAAGTGctacaaaagaaattgatgCAGCGTGAAATGAAGGATAGGAAACGAAATAACAATCAATCAATTCGAAAACGTCGCAAAAAGCGAAGAGCATCAACAACATCGTCACCTGAACATACACCGGAATATTACAATACAACGAGCAttcaaataaaacaagaaaaagaaacCGATGGAAGTGCGATCGAAAACAATGATGATCATTCAGAAAATTCATCAGATGTTCCAATGAATTTGTCAAATACAGAACAATCGAGACGCATCAAAAATGAGCAAACCACAAGTACAAATACATTACAACAAGGTACAAGCTCTCAATTTTTGGATAATgatacaattaaaaataaattgaagaataagTTAATGCCAATAATTGAAGCAAATGATCAGAAACCGGAAGAGAATCAATATaatattttctgtaaaaaagtTCGTCAAGCtcaacaaatgaaaatgtctGCTGCTGCAAATGTGACTAATCCTGTGACATCTACAGTTACTAGTAATCTTTTTGTAAATCCTAATCACCATCCAGGATCGATGCATGCACCGTATACTCATAATGTAGGAAATAATCAACCAAATTTAGACCATCCAAATGAGACAATTATATTGAAACCAGCATCGTCTAAGCGCAAGCAAAAGCGCGAAACTATTCAAATGATGAAACGTAAATTAGAGGAATCATCATTAGCCAATGAATCCAACTTAAATTCAGTTGATTCAAATGAGTTGCCACTAAAAGAAGATTTCATATTGCCTCGCGAGAGATTTATAAGCATTTGCAATATGGATCGTAATGCATTAGATACTTATTTGAATAATAGTGAAGAGAATTCACAAGATTTGGAATTACTGCAGTATTTCGGTGAAGacaaaaaccataaaaatactGACTGCATTGAAGAAGATTTGGGACCAATGACAACGAGTGTCCCACTTCTTGAGAATTATCagttaaatttcaatgaaaataacaataataataataataataataataataaatgtgatagacaaaatgctgaaaaaatcATGCAATTGAGAACAATATTAGAGGAGAAATATAATACGTCATGTAGTGCATCAAATGCTACAGCTAGTAATGATTcggtcattaaaaatttattgctgaaaAATCCCCATTTGCAGCATCATCACCACCATCATCAGCAGCAACCAAATATGAGTAATGATGGCATAGATTTATTTCATGCAATGACTGGAGACCATCAACATgcaggaaattttcaaatgaattcaATTACACCTAATACGGGAATGTCTGACAAATTAGCAGTTCCACAATCCCCAAATACACgacgtaaaaattttagttttgtgCCAATTCCATCGCAATCGTCACGCGTGAAAAATATCAACTTAAATCCAGCATTTAGGGgtaatggaaatggaaatggtAATGGGAATCAACCAACAAGTCCTTTTATAAGTCCACGAGTAACGCCAATTTCAAATAAGCAACCAAATAATCAACAATCCTTAAGTGTTCGATCTCCAAATGTCTCGATTGACACATCAAAAAACATTCCACTGTTGGGCGTTAACAATACAGCATTTTGTCGACCGACACATTTTAAGATGGAACCAAGTTCAGCACCACCAAGTCCTTCAATGGCTCCTCaaaatcactttaattttAGCCCACAttcacagcaacaacaacagcaacattttcaatttaataatcaaaatattgcTCCACAGCAACAGCAAGGAAGTACAACTAATTATAATTATCCAGTTGAGTCGCGTTCACAAAGTGTTCCACCTCATTGTACAAATAATATTTACGGCGGAAATACCAATGCAACATTTAACAATTATTCTTCAGCGTGCAGCTCAATGGCAGTAACGCCTGTACCATCCGATTATCAAGAATTCAATgatacaaatattttagaaatattcaataatgaGCAGCCACCCTTATCATCGACGATTAAAATGGAAACAAATGATGACGTCATAAGTGATTTATTAGATAATGACTTGTTGAATCAAAACTCAAACACATCCGAAAGTGATTCATTACTTTCGGGTACAATGCGTCCACGATTCAATTCAATATCAAGATCAGTGCCATGTACACCTTTACCGTATCATTCAAACAATAACTACACAAATGTAAATGGCAGCAGCATGAATGCATCTGTTCCAAACACGCCAATTTCAAATGCATCAAATCCATTCCGTTATAGTCCAGAATTACAGCGTACTCGTGATTTTCTAATAAAtggatttaataataatatcaatcacaataataatattatcaaCAAGCTTTCAAAAGCTCACGACGGAACAGCCACAATTGATGAACTcgatacaaatttattaaacaactTGTGA
- Protein Sequence
- MTFQPWKQAFNNLPNQFYRNNKNDSSDSASSTFNSNKMKNGDIEISGPSSASNLNILSPQSSTSTSHPFDLNNEHYQSPASTNNVLVENEPVVGSNKGSINGTKFSIFSQLINLNKINAFDNLLLNASMSLDDDDFSCDKRQGMRKLMEQAISDEAKQQIAFILEKISTLRPAEKLLLYLKMPGGHCEVDPLKQSQNPLGSRSEISHTINWVRSHLEQDDKVSIPKQEVYEDYVTFCAKINIKPLSTADFGKVMKQVFPDIRPRRLGTRGHSRYCYAAMRKATKLSAPHLPEIRNNEATSKKNSNNGSGTENESTWKVIKNWSENLLGNQFESLDDLAEHISHNNLNIPSISSSTSKQVLQKKLMQREMKDRKRNNNQSIRKRRKKRRASTTSSPEHTPEYYNTTSIQIKQEKETDGSAIENNDDHSENSSDVPMNLSNTEQSRRIKNEQTTSTNTLQQGTSSQFLDNDTIKNKLKNKLMPIIEANDQKPEENQYNIFCKKVRQAQQMKMSAAANVTNPVTSTVTSNLFVNPNHHPGSMHAPYTHNVGNNQPNLDHPNETIILKPASSKRKQKRETIQMMKRKLEESSLANESNLNSVDSNELPLKEDFILPRERFISICNMDRNALDTYLNNSEENSQDLELLQYFGEDKNHKNTDCIEEDLGPMTTSVPLLENYQLNFNENNNNNNNNNNNKCDRQNAEKIMQLRTILEEKYNTSCSASNATASNDSVIKNLLLKNPHLQHHHHHHQQQPNMSNDGIDLFHAMTGDHQHAGNFQMNSITPNTGMSDKLAVPQSPNTRRKNFSFVPIPSQSSRVKNINLNPAFRGNGNGNGNGNQPTSPFISPRVTPISNKQPNNQQSLSVRSPNVSIDTSKNIPLLGVNNTAFCRPTHFKMEPSSAPPSPSMAPQNHFNFSPHSQQQQQQHFQFNNQNIAPQQQQGSTTNYNYPVESRSQSVPPHCTNNIYGGNTNATFNNYSSACSSMAVTPVPSDYQEFNDTNILEIFNNEQPPLSSTIKMETNDDVISDLLDNDLLNQNSNTSESDSLLSGTMRPRFNSISRSVPCTPLPYHSNNNYTNVNGSSMNASVPNTPISNASNPFRYSPELQRTRDFLINGFNNNINHNNNIINKLSKAHDGTATIDELDTNLLNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319446;
- 90% Identity
- iTF_00319446;
- 80% Identity
- -