Crip011333.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- rfx7.L
- Assembly
- GCA_001014505.1
- Location
- JXPV01013709.1:8648-14737[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.2e-33 4e-29 101.1 0.0 3 77 211 285 209 287 0.97 2 3 2 1.9e+04 -3.8 0.0 21 39 712 730 703 739 0.72 3 3 0.02 1.9e+02 2.8 0.1 23 41 979 997 976 1001 0.87
Sequence Information
- Coding Sequence
- atgaCATTTCAGCCGTGGAAGCAAGCCTTTAATAATTTACCAAATCAATTTTATCGtaatattaacaataaaaatgatagCAGTGATTCGGCTTCATCGACATTTAATAgcagcaaaatgaaaaatggtgACATCGAAATTTCTGGACCGTCATCGGTATCAAATCTAAATATTTTGTCACCGCAATCATCGACATCAACATCCCATCCATTTGATTTTAACAATGAGCACTACCAATCACAAGTTTCTGCTTCCACAAATAATGTTCTTATTGATAATGAACCAGTCATTGCAACTAATAAAGGCTCCCTTAATGgtacaaaattttccatcttttcgcaattaattaatttaaataaaatcaatgccTTTGACAACCTACTGCTCAATGCATCTATGAGTCTAGATGACGACGATTTTAGTTGTGATAAAAGACAAGGAATGAAAAAGCTTATGGAACAAGCAATCagCGATGAGGCAAAACAGCAAATTGCATTTATTCtggaaaaaatatcaacattaCGTCCAGCCGAAAAACTTTTGTTGTATCTTAAAATGCCTGGTGGTCATTGTGAAGTTGaTCCATTAAAACAATCGCAGAATCCCCTAGGTTCACGTTCCGAGATATCACATACTATAAATTGGGTTCGTTCACATCTAGAGCAAGatgataaagtttcaattccGAAACAAGAGGTATATGAGGATTATGTGacattttgtgcaaaaattaacataaagcCCTTGTCAACGGCTGATTTTGGAAAGGTGATGAAGCAAGTTTTTCCCGATATACGCCCACGACGTTTAGGTACAAGAGGTCACTCACGATATTGTTATGCTGCAATGAGAAAAGCTACTAAACTCTCTGCTNCGATATTGTTATGCTGCAATGAGAAAATTACAtcaaagaaaaacaataataataatgataataataatggaagtGACAATGAGTCTACATGGAGAGTGATTAAAAATTGGTCTGAAAATTTGCTCGGCAATCAATTTGAATCTTTGGATGATCTTGCAGAGCacatttctcaaaataatttaaatatcacaTCAATATCATCTACCTCAAAGCAAGTGctacaaaagaaattgatgCAGCGTGAAATGAAGGATAGAAAACGAAACAACAATCAATCAATTCGAAAACGTCGTAAAAAGCGAAGAgcatcaacaacatcaacacCTGAACATACATCGGAATATTATAATACAGCGagcattcaaataaaacaagaaaaagaaaccGATGGAAGTGCGATCGAAAACAATGATGATCATTCAGAAAACTCCTCAGATGTTCCAATGAATTTGTCAAATACAGAACAATCGAGACGTATCAAAAATGAGCAAACCACAAGTACAAATATACTACAACAAGGTACAAGCTCTCAGTTTTTGGATAGtgatacaataaaaaataaactgaagAATAAGTTATTGCCAATAGTTGAGGCAAATGATCAGAAACCGGAAGagaataaatataatattttctgtaaaaaaGTTCGTCAAGctcaacaaatgaaaatgtctgCTGCTGCAAATCCTCCTAATATCGTAACATCTACAGTAACTAGCAATCTTTTTGTTAATCCTAATAATCATCCTGGATCGATGCATGCACCTTACAGCCATAATTCAAATGTCATAAATAACCAACCAAATTTAGACCATCCAAACGAGTCAACGATATTAAAGCCAACATCTTCTAAACGCAAGCAAAAGCGTGAAACTATTCAAATGATGAAACGTAAATTAGAAGAATCAGCAGCTGCAAATGAATCACCATTAAATTCAGTTGATTCAAATGAGTTGCCTCTTAAAGAAGATTTCATATTGCCTCGTGAGAGATTCATAAGCATTTGCAATATGGATCGTAATGCATTAGATACTTATTTGAATAATAGTGAGGAAAATTCACAAGATTTGGAATTATTACAGTATTTTGGTGAGGACAAAAATCATAGTAAAAATACTGAATGCATTGAAGAAGATTTGGGACCAATGACAACTACTGTTCCACTTTTAGagaattatcaattaaatttcaatgaaaataataacaataataataataataataaatgtgatagacaaaatgctgaaaaaatcATGCAATTGAGATCAATATTAGAAGAGAAATACAACACGTCATGTAGTGCTGCAAACCCTTCAACTAGTAATGATtctgtcattaaaaatttattacttaagAACCCCCATTTGCAGCATCATCACCATCACCACaatcatcaacagcaacaaaatatgAGTAATGATGCGGCAGATTTATTTCAAGGATCTGCATTAACTGGAGATCATCAACATTcgggaaattttcaaatgaattcaattcaatCCAATATTGGACTATCTGACAAATTAATAGTTCCACAATCCCCAAATACGCGACgtaaaaattttagttttgtaCCAATTCCATCGCAGTCTTCTCgtgtgaaaaatattaactTGAATCCAGCATTTAGAACCAATGGAAATGGTAATGTCAATCAACCGACAAGTCCATTTATAAGTCCACGAGTAACACCAGTTTCAACTAAGCAGCCAAATAATCAACAATCTATAAGTGTTCGATCTCCAAATGTCTCGATTGACACATCTAAAAACATTCCACTGTTGGGCGTTAACAATACAGCATTTTGTCGTCCAACACATTTTAAGATGGAACCGAATTCAGCACCACCAAGTCCTTCAATGGCTCCtcaaaatcactttaattttaGCCCACattcacaacaacaacaacaacagttTCAATTTAGTAATCAAAGTATTGCTCCAccacagcagcagcagcagcagcaaggAAGTACAACTAATTATAATTATCCAGTTGAGTCGCGTTCACAAAGTGTTCCACCTCATTGTACAAATAACATTTATGGCGGAAATAATAATGCAACATATAACAATTATTCTTCAGCATGTAGCTCAATGGCAGCAACGCCGGTACCATCAGATTATCAAGAATTTAATGATACAAATATACtagaaatattcaataatgaGCAGCCACCCTTATCATCTACGattaaaatggaaacaaaTGATGATGTCATTAGTGATTTATTAGATAATGACTTGttgaatcaaaattcaaaccatTCTGAAAGTGATTCGTTGCTTTCGGGTACAATGCGTCCTAGATTCAATTCAATATCAAGATCAGTGCCATGTACACCTTTACCCTATCATTCAAACAACAACTACACTAATGTAAATGGCATCAGCATGAATACATCTGTTCCAAACACGCCAAttacaaattcatcaaatccaTTCCGTTATAGTCCAGAATTACAGCGTACTCgagattttcttattaatggatttaataataatattaatcacaataataataatattattaataagcTTTCAAAAGCTCATGACGGAACAGCTACAATTGATGAACTTGATACAAATTTGCTAAACAACTTGTGA
- Protein Sequence
- MTFQPWKQAFNNLPNQFYRNINNKNDSSDSASSTFNSSKMKNGDIEISGPSSVSNLNILSPQSSTSTSHPFDFNNEHYQSQVSASTNNVLIDNEPVIATNKGSLNGTKFSIFSQLINLNKINAFDNLLLNASMSLDDDDFSCDKRQGMKKLMEQAISDEAKQQIAFILEKISTLRPAEKLLLYLKMPGGHCEVDPLKQSQNPLGSRSEISHTINWVRSHLEQDDKVSIPKQEVYEDYVTFCAKINIKPLSTADFGKVMKQVFPDIRPRRLGTRGHSRYCYAAMRKATKLSAXILLCCNEKITSKKNNNNNDNNNGSDNESTWRVIKNWSENLLGNQFESLDDLAEHISQNNLNITSISSTSKQVLQKKLMQREMKDRKRNNNQSIRKRRKKRRASTTSTPEHTSEYYNTASIQIKQEKETDGSAIENNDDHSENSSDVPMNLSNTEQSRRIKNEQTTSTNILQQGTSSQFLDSDTIKNKLKNKLLPIVEANDQKPEENKYNIFCKKVRQAQQMKMSAAANPPNIVTSTVTSNLFVNPNNHPGSMHAPYSHNSNVINNQPNLDHPNESTILKPTSSKRKQKRETIQMMKRKLEESAAANESPLNSVDSNELPLKEDFILPRERFISICNMDRNALDTYLNNSEENSQDLELLQYFGEDKNHSKNTECIEEDLGPMTTTVPLLENYQLNFNENNNNNNNNNKCDRQNAEKIMQLRSILEEKYNTSCSAANPSTSNDSVIKNLLLKNPHLQHHHHHHNHQQQQNMSNDAADLFQGSALTGDHQHSGNFQMNSIQSNIGLSDKLIVPQSPNTRRKNFSFVPIPSQSSRVKNINLNPAFRTNGNGNVNQPTSPFISPRVTPVSTKQPNNQQSISVRSPNVSIDTSKNIPLLGVNNTAFCRPTHFKMEPNSAPPSPSMAPQNHFNFSPHSQQQQQQFQFSNQSIAPPQQQQQQQGSTTNYNYPVESRSQSVPPHCTNNIYGGNNNATYNNYSSACSSMAATPVPSDYQEFNDTNILEIFNNEQPPLSSTIKMETNDDVISDLLDNDLLNQNSNHSESDSLLSGTMRPRFNSISRSVPCTPLPYHSNNNYTNVNGISMNTSVPNTPITNSSNPFRYSPELQRTRDFLINGFNNNINHNNNNIINKLSKAHDGTATIDELDTNLLNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320321;
- 90% Identity
- iTF_00320321;
- 80% Identity
- -