Crip018111.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chironomus riparius
Gene Symbol
sip1
Assembly
GCA_001014505.1
Location
JXPV01019943.1:14-3039[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.7e-81 1.6e-77 260.9 13.7 1 275 383 649 383 649 0.97
2 2 0.52 4.9e+03 -3.1 0.0 4 172 662 677 655 694 0.44

Sequence Information

Coding Sequence
atggaaGAAGAGTACGAGAAGTTCGAAATAACAGACTACGATCTTGACAATGAGTTCAATCCAAACAGGAACAGAAAGAAATTCACAAAGAATCAGCAAATTTATGGCGTTTGGGCAGACAGCGACGATGATGCAACGGAACTGGAAATGAAGGGATCAAAAGGGGGTCGTAAGAACTTTAAAGACTATACAGCACCTGTAAGTTTTGTTTCTGGTGGTGTACAGCAGTCTGggaagaaaaaggaagaactgaaagattcaaaaaagaagaaaagcgACGACGATGAGGATGAAGATACAGCACATCGTGGATTTGGATTTAATCAAATCAAGAAAGAATCCAGTGACTCATCAGAAGAGGAAGTTCGTCCAACATTTCAGCCAAAGGAAGTTGCTGGCATGCGACAAACCAAAGGCTCAATGTCCAATAAAGGATTAGGAAATTGGGAACAGCACACGAGAGGCATTGGTGCTAAATTGTTACTTCAAATGGGTTTTCAGCCTGGTAAAGGTTTAGGAAAGGAATTGCAAGGTATTTCAGCACCTGTTGAAGCTCATGTAAGAAAAGGACGTGGTGCAATTGGAGCTTATGGACCTGAAAAGAAGACAAAGATTGCAGAACTTAAGCCAACAAAGAAGCAGgatgatgaaagaaaagaaggtAAGGCTGAGAAACAGTGGTCCAAGAAAGGACACAAAAAACGTTATTTCTACAAAAGTGTTGAGGATGTGattgaaaaaggaaagaagcCAGACTACATGTTGTACGATAGTGGCAATAAATTGAGTAAAGTAACAGTAATTGACATGACAGGACCTGAAAAGCGAGTATTAAGTGGATATCATGcattaaatcaaatgaaagtCGCAGACGAAGATCATTTAATAGAAACTAAACAGCCAGACCTTAAACACTTCCAATTGCCCGAATTAATGCataatttaacattaataGTCAACATGTGTGAGCAGGACATTATAGCTAATGATAAAAGACATAGAACAGCTGATGATAGACAAAGAActattaaaactgaaaaagaACAGCTTGAGAAGATTGTAGTACTAGAGAAACAGTATATTGAGACATTAGAGGATGTTGAGGAGCTTGTTGCAAAGATTGTAGACACAGAAAATCCACCAAGCCTCGAAGAAGCTGAAACAGTATTCATAGAATTAAAAGTGACATTtccaaatgaatttaaagagTTTAATTTACCTGATTTGGCACCAACTGTTATAGCACCACTTATTAATGCCAGTATCAAAGACTGGAAGCCGTTAGAGGAACcgacaaaacatttaaaaataataagaaagtgGGCAGGTCTATTAGATTACTCAAAGTCATCAGCAACAACATTTTTCGATCCATATGAAGCACTTGTTTGGTCATGTATTGTTCCTTACTTCCGACAAGCTGCAAACGAATGGAATCCAAAGAATCATTCACAAATGGCAGCGTTGCTCGATGCATGGTCAGCGCTTATGCCTGAAAGATTACTTGATAATGTCCTTGAATTAATCGTTTTAAGTCGTTTGACACAAGCAGTCAATGAATGGGATCCATTAACGGATATAGTACCAATTCATGAATGGATACTTCCTTGGTCTGGAATATTAGGTgaaaaaatgcatgaaaatgtCTACAAAACAATTTGTGATAAATTAAGTAAAGCTTTTCGTGCTTGGCATCCACAAGATCGATCAGCACTAGCTATGATAAGACCCTGGAAGAATGTATTTAAGGATGAAGACTTACAGATATTTTTACATAAGAATGTGGTTCCAAAATTGGAGTTTcgtatgaatgaaattataatcGATCCACGTCAACAAGATTTGGAAGTTTTTAAGCAAGTCTACGACTGGAATGAACTTTTAACAACTCAAGTCATGACAAACATCTTAGACAAATATTTCTTTCCAAAATGGATACAAACTCTCGTTCTGTGGCTTAATCAGTCACCTAATTATGATGAAATCTCGCGATGGTATAAAGACTGGCAGAGTCAATTTAGTGAAGCTCTTTTGAAGCAGCCAAACATTAATGAACATTTGAGACGAGCTCTTGACTTGATGAAGCGTGCAACTGGCAAATATGTTCAAGAACCAGTAACTGTACAACCATTGCCGTCATTAATGGAACTTAATATTAAGCCACCGTCAAcaattaatttagaatttaaggAAATTGTCTCACAAAAGTGTGCAGAACGAGGAATTATCTTCGCACCAATGCCTGGACGACGAGAGAATGGAAAGCAAGTTTATAGACTTGGGAAATTATTTTGCTATTTCGATAAATCAGTTTGCTGTGTTAGTCCTGATCCTGGAAAATCGTCGCAATGGATGCCGATGTCGCTAAGTGTGATTCTAGAGAAAGCTAAGTGA
Protein Sequence
MEEEYEKFEITDYDLDNEFNPNRNRKKFTKNQQIYGVWADSDDDATELEMKGSKGGRKNFKDYTAPVSFVSGGVQQSGKKKEELKDSKKKKSDDDEDEDTAHRGFGFNQIKKESSDSSEEEVRPTFQPKEVAGMRQTKGSMSNKGLGNWEQHTRGIGAKLLLQMGFQPGKGLGKELQGISAPVEAHVRKGRGAIGAYGPEKKTKIAELKPTKKQDDERKEGKAEKQWSKKGHKKRYFYKSVEDVIEKGKKPDYMLYDSGNKLSKVTVIDMTGPEKRVLSGYHALNQMKVADEDHLIETKQPDLKHFQLPELMHNLTLIVNMCEQDIIANDKRHRTADDRQRTIKTEKEQLEKIVVLEKQYIETLEDVEELVAKIVDTENPPSLEEAETVFIELKVTFPNEFKEFNLPDLAPTVIAPLINASIKDWKPLEEPTKHLKIIRKWAGLLDYSKSSATTFFDPYEALVWSCIVPYFRQAANEWNPKNHSQMAALLDAWSALMPERLLDNVLELIVLSRLTQAVNEWDPLTDIVPIHEWILPWSGILGEKMHENVYKTICDKLSKAFRAWHPQDRSALAMIRPWKNVFKDEDLQIFLHKNVVPKLEFRMNEIIIDPRQQDLEVFKQVYDWNELLTTQVMTNILDKYFFPKWIQTLVLWLNQSPNYDEISRWYKDWQSQFSEALLKQPNINEHLRRALDLMKRATGKYVQEPVTVQPLPSLMELNIKPPSTINLEFKEIVSQKCAERGIIFAPMPGRRENGKQVYRLGKLFCYFDKSVCCVSPDPGKSSQWMPMSLSVILEKAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00320596;
90% Identity
iTF_00320596;
80% Identity
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