Basic Information

Insect: Chilo suppressalis
Gene Symbol: -
Assembly: None
Location: chr10:18006902-18045649[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 6e-05 0.0034 17.5 2.2 1 23 403 425 403 425 0.97

2 20 0.014 0.83 10.0 0.9 1 20 431 450 431 453 0.94

3 20 1.6e-05 0.0009 19.3 5.6 1 23 472 494 472 494 0.98

4 20 7.2e-05 0.0042 17.2 4.1 1 23 500 522 500 522 0.99

5 20 0.0001 0.0058 16.8 5.6 1 23 528 550 528 550 0.97

6 20 5.3e-06 0.0003 20.8 8.3 1 23 556 578 556 578 0.97

7 20 3.9e-07 2.3e-05 24.3 3.1 1 23 584 606 584 606 0.98

8 20 7.5e-05 0.0044 17.2 6.7 1 23 612 634 612 634 0.97

9 20 7.5e-05 0.0043 17.2 6.5 1 23 640 662 640 662 0.97

10 20 3.6e-07 2.1e-05 24.5 1.9 1 23 668 690 668 690 0.98

11 20 3.7e-05 0.0021 18.1 7.9 1 23 696 718 696 718 0.98

12 20 6.2e-06 0.00036 20.6 6.4 1 23 724 746 724 746 0.98

13 20 3.3e-06 0.00019 21.4 5.3 1 23 752 774 752 774 0.98

14 20 5.5e-07 3.2e-05 23.9 3.5 1 23 780 802 780 802 0.98

15 20 3.8e-05 0.0022 18.1 6.1 1 23 808 830 808 830 0.97

16 20 1.8e-05 0.0011 19.1 6.1 1 23 836 858 836 858 0.98

17 20 0.0003 0.018 15.3 8.4 1 23 864 886 864 886 0.97

18 20 1.1e-05 0.00065 19.8 4.0 1 23 892 914 892 914 0.96

19 20 0.00054 0.031 14.5 0.3 1 23 921 943 921 943 0.96

20 20 0.24 14 6.1 5.0 1 23 955 977 955 977 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	6e-05	0.0034	17.5	2.2	1	23	403	425	403	425	0.97
2	20	0.014	0.83	10.0	0.9	1	20	431	450	431	453	0.94
3	20	1.6e-05	0.0009	19.3	5.6	1	23	472	494	472	494	0.98
4	20	7.2e-05	0.0042	17.2	4.1	1	23	500	522	500	522	0.99
5	20	0.0001	0.0058	16.8	5.6	1	23	528	550	528	550	0.97
6	20	5.3e-06	0.0003	20.8	8.3	1	23	556	578	556	578	0.97
7	20	3.9e-07	2.3e-05	24.3	3.1	1	23	584	606	584	606	0.98
8	20	7.5e-05	0.0044	17.2	6.7	1	23	612	634	612	634	0.97
9	20	7.5e-05	0.0043	17.2	6.5	1	23	640	662	640	662	0.97
10	20	3.6e-07	2.1e-05	24.5	1.9	1	23	668	690	668	690	0.98
11	20	3.7e-05	0.0021	18.1	7.9	1	23	696	718	696	718	0.98
12	20	6.2e-06	0.00036	20.6	6.4	1	23	724	746	724	746	0.98
13	20	3.3e-06	0.00019	21.4	5.3	1	23	752	774	752	774	0.98
14	20	5.5e-07	3.2e-05	23.9	3.5	1	23	780	802	780	802	0.98
15	20	3.8e-05	0.0022	18.1	6.1	1	23	808	830	808	830	0.97
16	20	1.8e-05	0.0011	19.1	6.1	1	23	836	858	836	858	0.98
17	20	0.0003	0.018	15.3	8.4	1	23	864	886	864	886	0.97
18	20	1.1e-05	0.00065	19.8	4.0	1	23	892	914	892	914	0.96
19	20	0.00054	0.031	14.5	0.3	1	23	921	943	921	943	0.96
20	20	0.24	14	6.1	5.0	1	23	955	977	955	977	0.99

Sequence Information

Coding Sequence: ATGAATCCAGATCATCACAATATCAACACGGGTGGTGGCCAGCCTCCTGGAACTTCGGAGTCTCAAAATCAAAGAGTACAAAGTGCTCAACAACAACAGCAAGGTAGTAATTTACCAGCTACGACGTCTGCGACAGATCTCAGAGTGAATTCTGCGGCAGTGAACGTTGCTTTGTCTAGCGTCGCCAAATACTGGGTTTTTACAAACCTTTTCCCTGGACCTATACCGCAAGTGTCTGTTTATGGCCTCCCTACCGGTGCTAGAATTGAAAATGGAAAGCCTGTCCAGTTGCTGCAGGATCTGGGACAAACACATGCTAGTATACTCAACGGTGACCCCAACATCATACTGGGGCACCATGCTAGCCAACCCCAAGTCACAGTTTCAGCTGCAGGAGCTCAGCAAATACCAGTTTCACAAATCATTGCCACTCAGTCGGGACAAGCACATGAAGCATTGGTGGCTCATACACAACAGCAAGAGCTTGCTGCTCATCAAGCATCGGGCACAACTCAGGTCACTGTTAGCCCAGGCCAGCCTCATCAGCAGGGCCATCATTCACATCAACACTTAATGCAGCAGCAACTGATGGCCAGTGCCCGTCCAGAACACTCAAATCAACAGATCCAGTTGACAGTGAGCGAGGATGGCATCGTGACCGTAGTAGAGCCGGGCGGCAAGTTGGTAGACAAGGAGGAATTGCACGAAGCTATCAAGATGCCCACGGATCATACGCTCACCGTGCATCAATTGCAGCAGATCGTGGGGCAACAGGTCATAGACAGCGTTGTTCGTATAGAACAGGCGACGGGTGAGCCCGCAAATATCCTCGTGACGCACAATCCCGATGGCACCACGTCCATAGAAGCCAGCCCTGGTGATCAACTTATCGTCAAAGATGAGAAAAACTCTTCCAAACTCGAGACTACACAATATGCCGAAATCAAAGACATCAAGGGCATAGATTTAAAGAGTGTAGGAGCAATGGGAATGGAAGGGGCCGTTGTGAAAATATCTGGTGCTTCAGAGCACGATCTTCACGCCATGTATAAAGTTAATGTAGAAGATTTATCACAGCTGTTGGCTTACCATGAAGTGTTTGGGAAACTTAACGCTGAAGGACAACAACAAGCAAAGCCAGTGGAGGTAGATGTGGAGGCAGGGACAAGCACTGCTATGGCTGAAGCAGAATCACCGCCTGGTCACCATTCATGTGACATTTGTGGAAAGATATTCCAGTTCCGTTATCAGCTTATTGTTCATAGACGATACCATGGTGAGAGCAAACCATTCACATGTCAAGTGTGCGGTTCAGCTTTTGCTAATCTGGTTGAATTGTCAAAACATGGGAAGTGTCACCTTGCTGGTGATCCGGCTGAAAGACACACCAAGCGAATGACACAAGATAAACCTTATGCCTGCACTACGTGCCACAAGACGTTCTCTCGTAAGGAACATCTAGACAACCACGTTCGCAGTCACACTGGAGAAACGCCGTACAGGTGTGAGTTCTGCGCGAAGACTTTCACTCGGAAAGAGCACATGGTGAATCACGTACGCAAGCATACGGGTGAAACGCCGCATCGCTGCGAGCTATGCAAAAAGAGCTTCACTAGGAAAGAGCATTTCATGAACCATGTCATGTGGCACACTGGTGAAACACCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAACGAACCATATGAGGTCGCATACTAATGATACGCCGTTCCGATGCGATTTGTGCGGCAAGTCGTTCACCAGAAAGGAACATTTCACCAATCACATTATGTGGCATACGGGCGAAACTCCGCACCGTTGCGACTTCTGCTCGAAGACATTCACCCGTAAAGAGCATCTGTTGAACCACGTCCGTCAGCATACTGGCGAGTCGCCGCACCGATGCAACTTCTGCTCGAAGTCGTTCACGAGGCGAGAGCATCTCGTCAATCACGTGCGTCAGCACACCGGCGAGACTCCCTTCCAGTGCGGATACTGTCCCAAGGCGTTTACGAGGAAAGACCATCTCGTGAACCACGTGCGGCAGCACACGGGCGAGTCACCGCACAAGTGCTCGTTCTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACGGGCGAGTCGCCGCACCGCTGCAGCTACTGCGCCAAGTCCTTCACCAGGAAGGAGCACCTCACCAACCATATCAGACAACATACGGGAGAAACGCCGCACAAATGTACGTACTGCCCGCGCGCGTTCTCGCGCAAGGAGCACCTCACTAACCACGTGCGCCAACACACCGGAGACATGCCCTTCAGCTGCACTTACTGCCCCAAGACGTTCAACAGGAAAGAGCATCTCGTTAACCATATCAGGCAACACACAGGCGAGACGCCGTTCAAGTGTACGTACTGCGCGAAGTCGTTCTCTCGCAAGGAACACCTCACGAACCACGTGCACCTCCACACGGGCGAGACGCCGCATAAGTGCGCCTTCTGCACTAAGACCTTCTCCAGGAAGGAGCATTTGACCAACCATGTCAGGATACACACAGGGGAATCCCCGCACCGCTGCCAATTATGCCAGAAGACATTCACTCGCAAAGAACACCTCACGAACCACTTCAAACAGCACACCGGCGACGCACCGCATGCCTGCAGGGTGTGTTCGAAACCGTTTACTAGGAAGGAGCATTTGGTCACGCATATGAGATCGCACACCTGTGGCCAGAGGCCTTTCAGTTGCGGCGAATGCGGCAAATCTTTTCCGTTGAAAGGCAACCTGCTCTTCCACGAGCGGTCACACAATAAGGCGGGTGCGGCTGCCGGCAATCGACCTTATCGATGTGATGTCTGCTCCAAAGAATTTTTATGTAAAGGTCATCTAGTCTCCCATCGGCGAACGCACACCGAAGCGGGCGACCCCCCCGCCGCCGGTGATGCTCCGGCTGAAACAGAAGACTGTGGAGACTGCAATGCAAAGTGTGTTAAGATTGACCCAGAAACGATCGAAAGGAAATATGAAATTGGAACAACAGCAGAAAGCAGCAAGCCAGCTGCAAATAATGTTACGGAACATCAACAAAGCAACCCAACTGTGATGCAAATAACGAGTCAAGAGGTACGAACGGCGCCTACGAGTACAGCCAGCGTGCCCACAACGTTCACCGTCAGCGGTCAGAACCACGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MNPDHHNINTGGGQPPGTSESQNQRVQSAQQQQQGSNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQLLQDLGQTHASILNGDPNIILGHHASQPQVTVSAAGAQQIPVSQIIATQSGQAHEALVAHTQQQELAAHQASGTTQVTVSPGQPHQQGHHSHQHLMQQQLMASARPEHSNQQIQLTVSEDGIVTVVEPGGKLVDKEELHEAIKMPTDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASPGDQLIVKDEKNSSKLETTQYAEIKDIKGIDLKSVGAMGMEGAVVKISGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQQQAKPVEVDVEAGTSTAMAEAESPPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANLVELSKHGKCHLAGDPAERHTKRMTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCELCKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLTNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFSRKEHLTNHVRQHTGDMPFSCTYCPKTFNRKEHLVNHIRQHTGETPFKCTYCAKSFSRKEHLTNHVHLHTGETPHKCAFCTKTFSRKEHLTNHVRIHTGESPHRCQLCQKTFTRKEHLTNHFKQHTGDAPHACRVCSKPFTRKEHLVTHMRSHTCGQRPFSCGECGKSFPLKGNLLFHERSHNKAGAAAGNRPYRCDVCSKEFLCKGHLVSHRRTHTEAGDPPAAGDAPAETEDCGDCNAKCVKIDPETIERKYEIGTTAESSKPAANNVTEHQQSNPTVMQITSQEVRTAPTSTASVPTTFTVSGQNHAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00035007;
90% Identity: iTF_00284745;
80% Identity: -