Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000009.1:134007-160189[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 5.9e-05 0.012 17.8 2.2 1 23 199 221 199 221 0.97

2 20 0.00094 0.19 14.0 0.6 1 21 227 247 227 249 0.94

3 20 1.5e-05 0.0031 19.6 5.6 1 23 268 290 268 290 0.98

4 20 7.1e-05 0.014 17.5 4.1 1 23 296 318 296 318 0.99

5 20 2.6e-05 0.0052 18.9 5.3 1 23 324 346 324 346 0.97

6 20 5.2e-06 0.001 21.1 8.3 1 23 352 374 352 374 0.97

7 20 3.9e-07 7.8e-05 24.7 3.1 1 23 380 402 380 402 0.98

8 20 7.4e-05 0.015 17.5 6.7 1 23 408 430 408 430 0.97

9 20 7.4e-05 0.015 17.5 6.5 1 23 436 458 436 458 0.97

10 20 3.6e-07 7.2e-05 24.8 1.9 1 23 464 486 464 486 0.98

11 20 3.6e-05 0.0073 18.5 7.9 1 23 492 514 492 514 0.98

12 20 1.3e-05 0.0026 19.8 7.8 1 23 520 542 520 542 0.98

13 20 4.7e-06 0.00094 21.3 4.3 1 23 548 570 548 570 0.98

14 20 1e-05 0.0021 20.2 4.7 1 23 576 598 576 598 0.98

15 20 4.6e-06 0.00094 21.3 3.6 1 23 604 626 604 626 0.97

16 20 1.8e-05 0.0036 19.4 6.1 1 23 632 654 632 654 0.98

17 20 0.00035 0.07 15.4 8.7 1 23 660 682 660 682 0.97

18 20 1.8e-06 0.00036 22.6 4.1 1 23 688 710 688 710 0.96

19 20 0.00033 0.066 15.5 0.2 1 23 717 739 717 739 0.97

20 20 0.22 45 6.5 5.0 1 23 750 772 750 772 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	5.9e-05	0.012	17.8	2.2	1	23	199	221	199	221	0.97
2	20	0.00094	0.19	14.0	0.6	1	21	227	247	227	249	0.94
3	20	1.5e-05	0.0031	19.6	5.6	1	23	268	290	268	290	0.98
4	20	7.1e-05	0.014	17.5	4.1	1	23	296	318	296	318	0.99
5	20	2.6e-05	0.0052	18.9	5.3	1	23	324	346	324	346	0.97
6	20	5.2e-06	0.001	21.1	8.3	1	23	352	374	352	374	0.97
7	20	3.9e-07	7.8e-05	24.7	3.1	1	23	380	402	380	402	0.98
8	20	7.4e-05	0.015	17.5	6.7	1	23	408	430	408	430	0.97
9	20	7.4e-05	0.015	17.5	6.5	1	23	436	458	436	458	0.97
10	20	3.6e-07	7.2e-05	24.8	1.9	1	23	464	486	464	486	0.98
11	20	3.6e-05	0.0073	18.5	7.9	1	23	492	514	492	514	0.98
12	20	1.3e-05	0.0026	19.8	7.8	1	23	520	542	520	542	0.98
13	20	4.7e-06	0.00094	21.3	4.3	1	23	548	570	548	570	0.98
14	20	1e-05	0.0021	20.2	4.7	1	23	576	598	576	598	0.98
15	20	4.6e-06	0.00094	21.3	3.6	1	23	604	626	604	626	0.97
16	20	1.8e-05	0.0036	19.4	6.1	1	23	632	654	632	654	0.98
17	20	0.00035	0.07	15.4	8.7	1	23	660	682	660	682	0.97
18	20	1.8e-06	0.00036	22.6	4.1	1	23	688	710	688	710	0.96
19	20	0.00033	0.066	15.5	0.2	1	23	717	739	717	739	0.97
20	20	0.22	45	6.5	5.0	1	23	750	772	750	772	0.99

Sequence Information

Coding Sequence: ATGTCTAAAAAgATCCAATTGACTGTGAGTGAAGACGGCATCGTCACGGTGGTGGAACCGGGAGGCAAGTTGGTTGACAAGGAGGAGTTGCATGAGGCGATAAAGATGCCTTCAGACCACACGCTAACTGTCCATCAGCTGCAGCAGATTGTAGGACAACAGGTCATAGACAGCGTCGTCCGTATAGAGCAGGCTACAGGCGAGCCCGCCAATATCTTGGTGACGCACAACCCCGACGGCACCACTTCCATAGAAGCCAGCGCTGGAGATCAGCTCATAGTCAAGGACGAGAAGAACGTTGGCAAACTAGAGGCCACGCAGTATGCTGAGATTAAAGACATCAAGGGCATAGACTTGAAGagtgtaggAGCCATGGGAATGGAAGGAGCAGTGGTCAAAATCTCAGGTGCCTCAGAACACGATCTTCATGCCATGTATAAAGTAAATGTAGAAGATTTATCACAGCTGCTAGCTTACCATGAAGTGTTTGGAAAACTTAATGCTGAAGGACAACAGCAAGCGAAGACAGTGGAAGTAGAAGTTGAAGCAGGAACAAGCACAGCTATGTCTGAAGCAGAATCATCGCCTGGCCATCATTCTTGTGATATCTGTGGAAAAATATTTCAGTTCCGTTATCAACTTATTGTACATAGACGATACCACGGCGAGAGCAAGCCATTCACATGTCAAGTTTGTGGTTCAGCTTTTGCCAACCCTGTTGAACTAACAAAACATGGAAGATGTCATCTCGCTGGCGATCCAGCGGAAAGGAACAACAAACGCATGACCCAAGACAAGCCGTACGCCTGCACCACCTGCCACAAGACCTTCTCTCGGAAGGAACATCTCGACAACCACGTGCGCAGTCATACCGGAGAAACTCCGTATAGATGCGAGTTTTGCGCGAAGACGTTCACCCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACCAGGAAGGAGCACTTCATGAACCACGTCATGTGGCACACCGGTGAAACTCCGCACCATTGTCAAATATGTGGCAAGAAGTATACTAGGAAGGAGCATTTAACGAACCATATGAGGTCGCACACTAATGATACCCCGTTCCGATGCGATCTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATTATGTGGCATACGGGCGAAACGCCCCACCGATGCGACTTCTGTTCAAAGACATTCACCCGAAAGGAGCATTTGCTGAACCACGTCCGCCAGCACACGGGCGAATCGCCCCACCGGTGCAACTTCTGCTCCAAGTCTTTCACGAGAAGGGAACACCTCGTGAACCACGTCCGCCAACACACGGGAGAAACGCCTTTCCAGTGCGGATATTGCCCGAAGGCGTTTACTAGAAAGGACCATCTCGTGAACCACGTCCGGCAGCACACGGGCGAGTCGCCGCACAAGTGCTCGTTCTGCACGAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACGGGCGAGTCGCCGCACCGCTGCACCTTCTGCTCCAAGTCCTTCACCAGGAAGGAACACCTCACCAACCATATCAGACAACATACGGGAGAAACGCCGCACAAATGCACGTACTGCCCGCGGGCGTTCGCGCGCAAGGAGCACCTCACTAACCACGTGCGCCAACACACCGGGGATATGCCCTTCTCCTGCACTTTCTGCACCAAGTCTTTCAACCGGAAGGAGCATCTTGTTAATCATATCAGACAACATACTGGCGAGACGCCATTCAAGTGCACGTACTGCGCGAAGTCTTTCTCCCGCAAGGAGCACCTGACGAACCACGTGCTCCTGCACACGGGCGAGACGCCGCACAAGTGCGCCTTCTGCACCAAGACCTTCTCCAGGAAGGAGCACTTGACCAACCACGTCAGAATACACACGGGTGAATCTCCGCATCGCTGCGAGTTCTGTCAAAAGACATTCACACGCAAGGAGCACCTCACGAACCACTTCAAACAACACACCGGCGATACGCCGCACGCGTGTAAGATCTGCTCCAAACCGTTCACTAGGAAAGAACATCTGGTGACGCATATGAGATCACACAGTTGCGGACAGAGACCATTCAGTTGCGGAGAGTGTGGCAAATCGTTCCCGCTCAAAGGCAACCTGATATTCCACGAGCGATCGCACAACAAAGCCAGCGGCGGTACCACGAGGCAGTATCGATGCGATATCTGCTCCAAGGACTTCCTATGTAAAGGTCATTTAGTGTCTCATCGGAGAACGCACACGGAAGCTGCCGATGCCGCGCCCAGCGGCGAAGCTCCGGCAGAGACCGAGGACTGCGGGGACTGCAATAAATGCGAGAAAATCGACACGGAGCTACCAGAGAGAAAGCATGATATCAGAGTGACAACGGAAAGTAGGCCGGCTGATAATAATGTCGCACAAAATCAACAAAGCAACCCAACTGTGATGCAAATAACGAGTCAGGAGGTGCGCGCGGCGGCAGCGACGAGCGCGCCGAGCGTGGCCACATTCACGGTGAGCACGCAGCACCACGCCGGCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MSKKIQLTVSEDGIVTVVEPGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDQLIVKDEKNVGKLEATQYAEIKDIKGIDLKSVGAMGMEGAVVKISGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQQQAKTVEVEVEAGTSTAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELTKHGRCHLAGDPAERNNKRMTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLTNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCSKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFARKEHLTNHVRQHTGDMPFSCTFCTKSFNRKEHLVNHIRQHTGETPFKCTYCAKSFSRKEHLTNHVLLHTGETPHKCAFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHFKQHTGDTPHACKICSKPFTRKEHLVTHMRSHSCGQRPFSCGECGKSFPLKGNLIFHERSHNKASGGTTRQYRCDICSKDFLCKGHLVSHRRTHTEAADAAPSGEAPAETEDCGDCNKCEKIDTELPERKHDIRVTTESRPADNNVAQNQQSNPTVMQITSQEVRAAAATSAPSVATFTVSTQHHAGAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00319114;
90% Identity: iTF_00284745;
80% Identity: -