Cfor019810.1
Basic Information
- Insect
- Chelonus formosanus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_028641665.1
- Location
- CM054006.1:23268837-23270823[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3e-113 5.2e-109 364.5 35.2 3 300 31 325 28 325 0.97 2 3 0.0065 1.5e+02 1.8 3.5 122 171 325 374 324 379 0.90 3 3 0.037 8.3e+02 -0.7 0.1 211 239 373 400 368 400 0.79
Sequence Information
- Coding Sequence
- atggAATCAACAATAGCGGGTCGCAGACGTGCTGCAACTAGACATGCAGCTGAAGATCAAGCTCTTGATCAAATCGCTAAAGAGGCAGGTGAAAGACTAGCAGCTCGGAGACAAGCAAGAGCAGAAGCTAGAGAAATTCGTATGAAAGAGTTAGAAAGACAGCAAAAAGAAGCTGAAGAAAACGCTGATAGAGTTTATGATATGTGTAATGTTGACGGAACTCGAATTATGAGGGTAACGCCAGACCCAATGAGAGCTTCACGGTTACTAACTAATTCTAACAGTTTTCAATCAAGTCGAAGGTCTTCCGAAGATTCTTTAGAAGAAGCTGGCCTAAGTAGAGATTTAAGAttagAACTTAAGGAATTAGAAGAGAAGTTTAGAAAAGCAATGATTGCAAATGCTCAgcttgataatgaaaaatcatcgTATGTTTATCAAGTTGACTtgttaaaagataaattagaaGAAACAGAAGAAGTTGTTGCGACATTACGAAGAGAATTCAGGGAAAAAAATCGAGAGGCTGAACAACTGAAGCGAGTTAATCAAAGATTAAAAGAAGATTATGAGAATTGCAAAACTCAATTAGAAGAAAGGGATAGGctaattcaagAAAATGGGTTAGTTATTGTTGAAGATGAAAACAGTGAAGATGAAGGAACCGGGGCATCGAATGGAATTCCAAGAAAAAGAGTACTAGTCAGTACAGAAGCTGcagaattattacaaaatgcTGGAGAAGGATCTCTggATGTCCGGTTAAGAAAGTTTGCCTcggaaaaaaaagaactgaCAGATGAAATTCGACACCTAAGACTAGAATTGGAAGAGGCCAAGAGTCGTCAAAGATCCGAAAGATCATCCGGATCAGTATTAGgaTTAATAGATTCCGAAGATGTTCAGAGAGAAGCGAACAAATTACTGGcagattataaatttaaattacaaaaagctGAACAAGATATGTCCACACTTCAAGCAAATGTTACAAGATTGGAAACTCAAGTTATTCGATACAAATCAGCAGCAGAAGCATCAGAGAAAGCTGAAGATGAAttgaaagttgaaaaaagaaaactacaGAGAGAAATAAGAGAAGCACAGAGTCGTGTAGATGAGTTAGAAACAGCAAACAATCATCTTCAACGACGATTAGATAAACTAAAAATGGCAAAATCAACGTTGCTCAAAGAAATTTGA
- Protein Sequence
- MESTIAGRRRAATRHAAEDQALDQIAKEAGERLAARRQARAEAREIRMKELERQQKEAEENADRVYDMCNVDGTRIMRVTPDPMRASRLLTNSNSFQSSRRSSEDSLEEAGLSRDLRLELKELEEKFRKAMIANAQLDNEKSSYVYQVDLLKDKLEETEEVVATLRREFREKNREAEQLKRVNQRLKEDYENCKTQLEERDRLIQENGLVIVEDENSEDEGTGASNGIPRKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELTDEIRHLRLELEEAKSRQRSERSSGSVLGLIDSEDVQREANKLLADYKFKLQKAEQDMSTLQANVTRLETQVIRYKSAAEASEKAEDELKVEKRKLQREIREAQSRVDELETANNHLQRRLDKLKMAKSTLLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00317464;
- 80% Identity
- -