Cfor014866.1
Basic Information
- Insect
- Chelonus formosanus
- Gene Symbol
- bab2
- Assembly
- GCA_028641665.1
- Location
- CM054005.1:4083715-4097300[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-12 1.6e-09 37.6 0.0 1 39 387 426 387 430 0.90 2 4 6.6e-12 5e-09 36.1 0.1 2 39 442 479 441 482 0.94 3 4 2.4e-18 1.8e-15 56.7 0.0 2 45 497 541 496 541 0.97 4 4 2.8e-18 2.1e-15 56.5 0.1 1 42 548 590 548 591 0.97
Sequence Information
- Coding Sequence
- aTGGATTCTGCACGTTATTGGAGTGCTCACTACAGCGGAGGGATGGCCGGGCAGCACTACTGCCTGCGCTGGAACAATTACCAGTCAAATATGACGTctgtttttcatcaattattacaaaCGGAGGCCTTCGTAGATGTTACCCTGGCCTGCAATGAAGCTTCGTTAAAAGCGCACAAGGTCGTCTTGTCAGCGTGCAGTTCATATTTCAAAAAGCTTCTACTGTCAAATCCATGTAAACATCCAACGATAATTATGCCACAAGATGTTTGCTTTAATGACCTCAAGTTCATCATCGAGTTTGTCTACAAGGGCGAGATTGACGTGTCACAAGCGGAACTTCAGTCATTGCTGAAGACGGCTGATCAGTTGAAGATCAAGGGTCTCTGCGAAGTACCGGAAAGTAAAGAAGCACCAGCAACTGTCAGTTTAAGCTCATCGCCAAGAGAGTCAGCTGCATCGAGGTTCAATTACACCAAGTTGAAGAGGCATCATCCAAAGTATAAACGACCACGAACGACATTTGAGCCAAGAGCTACGAGTACTGACTCAAGACACTACGACAGATacaaagaagaagaaaataacgATAGTCGTGGATTTAATTGCGAAAACGATAAagagAATCATCGGGGTGACTGGCAGACAGAGGATGAGGAGTGCGGAGAAGCAGCAGTAGTCCTGGAATCCTGCCAACGAGACAGCAACAACGGTAACGGCACAAACAACAATAACGGTGACATGTTCTGTCATACAGGGCTAGGTCACTATGGACATCATCCAGATCCCGGAGAGGTTGATTTACCACCCGAGACACAGCCAACACCACCAAGTGCTACGCTGGTTGGCACAACTATTACACACCTCAGGGACTCCGATAATCATTCGACAGATATTCAAAATTGTGACAGcgtcaaaattaaatttgaaacgCTTCATACGATGGATTCATCGGACACGATTGACATAGACAGTCACATGTCAGATTGTGCAAGTGTTAGCTCGAAACATGCAGCAGAGGGTGATAATATGATGATGATAACCCCAGAGCTGTTAGGACTTATGCCATCTGGGAGTTCTGTTCATTCAAATTCTGGTGAGAATAATATCCGAAGCCACTCTGGCGGATCTGGACACCATCATGGTTCTAAATCTTGGACTCAGGAAGATATGGATGCTGCACTAGAAGCCCTGAGAAATCACGATATGAGTTTAACAAAAGCCTCAGCAACTTTTGGCATACCATCGACAACTCTTTGGCAACGTGCGCACAGACTAGGTATCGATACTCCAAAGAAAGATGGGCCAACAAAATCGTGGAGCGATGAGAGTTTAAATAATGCCTTGGAGGCACTGCGGACCGGCACAATCTCTGCCAATAAAGCTTCCAAAGCATTTGGTATACCTTCTAGTACCTTGTATAAAATTGCCAGGAGAGAAGGTATTCGATTGGCTGCTCCGTTCAATGCGAGTCCTACCACTTGGTCACCGGCAGATCTCGATAGAGCTCTCGAAGCAATCAGGTCAGGACAGACCTCGGTGCAAAGAGCTTCTACTGAATTCGGTATACCCACAGGAACACTTTATGGAAGATGTAAGAGAGAAGGAATCGAATTGAGTAGAAGCAATCCGACTCCTTGGAGTGAAGATGCAATGACTGAGGCACTAGAGGCTGTTAggTTGGGCCATATGAGCATCAATCAAGCGGCTATTCATTACAATTTACCATACTCTTCTCTCTACGGACGTTTTAAAAGAGGTAAATATGAAGAGCCAGTCGTCAATGAAATGTCTCAAGATGGAACAAGTCCGCATTTTCATCAAAGTCCACATCATAATCATTCGTCCTCCCTTCCTGATCAAATGCCCTACCAAGGTAGCTGA
- Protein Sequence
- MDSARYWSAHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFKKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEVPESKEAPATVSLSSSPRESAASRFNYTKLKRHHPKYKRPRTTFEPRATSTDSRHYDRYKEEENNDSRGFNCENDKENHRGDWQTEDEECGEAAVVLESCQRDSNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDNHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDCASVSSKHAAEGDNMMMITPELLGLMPSGSSVHSNSGENNIRSHSGGSGHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGTSPHFHQSPHHNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01560354;
- 80% Identity
- iTF_00316904;