Basic Information

Insect: Cheilosia vernalis
Gene Symbol: -
Assembly: GCA_949126925.1
Location: OX421358.1:25812234-25822437[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.0046 0.58 11.5 1.8 1 23 322 344 322 344 0.97

2 28 0.00024 0.03 15.6 1.9 3 23 353 373 351 373 0.98

3 28 9.8 1.2e+03 1.1 0.0 2 23 402 424 401 424 0.80

4 28 0.0004 0.051 14.9 3.8 1 23 495 518 495 518 0.95

5 28 0.00054 0.068 14.5 0.5 1 23 525 547 525 547 0.98

6 28 0.27 33 6.0 0.8 2 20 556 574 555 576 0.93

7 28 3.4e-05 0.0043 18.2 0.6 2 23 588 609 587 609 0.97

8 28 0.001 0.13 13.6 1.8 1 23 616 638 616 638 0.98

9 28 0.0087 1.1 10.7 0.1 1 23 748 771 748 771 0.96

10 28 6.4 8.1e+02 1.6 0.1 1 10 810 819 810 829 0.83

11 28 0.011 1.3 10.4 3.4 2 23 842 863 841 863 0.97

12 28 7.3e-07 9.3e-05 23.5 0.9 1 23 870 892 870 892 0.98

13 28 0.027 3.4 9.1 4.0 1 23 1030 1053 1030 1053 0.96

14 28 4.2 5.2e+02 2.2 0.1 2 12 1061 1071 1060 1081 0.78

15 28 0.00041 0.051 14.8 1.4 1 23 1090 1113 1090 1113 0.97

16 28 0.022 2.8 9.4 1.4 1 23 1123 1145 1123 1145 0.98

17 28 5.5e-05 0.0069 17.6 1.0 1 23 1152 1174 1152 1174 0.98

18 28 0.0012 0.15 13.4 0.5 2 23 1198 1220 1198 1220 0.96

19 28 0.00038 0.048 14.9 0.8 1 23 1260 1283 1260 1283 0.95

20 28 0.3 38 5.8 3.4 1 22 1290 1311 1290 1311 0.96

21 28 2.6 3.3e+02 2.9 1.8 1 23 1320 1343 1320 1343 0.87

22 28 0.024 3 9.3 1.4 1 19 1349 1367 1349 1367 0.96

23 28 0.00018 0.022 16.0 1.4 1 23 1379 1402 1379 1402 0.95

24 28 1e-05 0.0013 19.8 0.3 2 23 1422 1443 1421 1443 0.95

25 28 0.00058 0.074 14.4 4.3 1 23 1449 1471 1449 1471 0.99

26 28 8.4e-07 0.00011 23.3 3.2 1 23 1477 1499 1477 1499 0.98

27 28 8.3e-07 0.0001 23.3 2.5 1 23 1505 1527 1505 1527 0.99

28 28 0.00024 0.03 15.6 0.4 1 23 1533 1557 1533 1557 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.0046	0.58	11.5	1.8	1	23	322	344	322	344	0.97
2	28	0.00024	0.03	15.6	1.9	3	23	353	373	351	373	0.98
3	28	9.8	1.2e+03	1.1	0.0	2	23	402	424	401	424	0.80
4	28	0.0004	0.051	14.9	3.8	1	23	495	518	495	518	0.95
5	28	0.00054	0.068	14.5	0.5	1	23	525	547	525	547	0.98
6	28	0.27	33	6.0	0.8	2	20	556	574	555	576	0.93
7	28	3.4e-05	0.0043	18.2	0.6	2	23	588	609	587	609	0.97
8	28	0.001	0.13	13.6	1.8	1	23	616	638	616	638	0.98
9	28	0.0087	1.1	10.7	0.1	1	23	748	771	748	771	0.96
10	28	6.4	8.1e+02	1.6	0.1	1	10	810	819	810	829	0.83
11	28	0.011	1.3	10.4	3.4	2	23	842	863	841	863	0.97
12	28	7.3e-07	9.3e-05	23.5	0.9	1	23	870	892	870	892	0.98
13	28	0.027	3.4	9.1	4.0	1	23	1030	1053	1030	1053	0.96
14	28	4.2	5.2e+02	2.2	0.1	2	12	1061	1071	1060	1081	0.78
15	28	0.00041	0.051	14.8	1.4	1	23	1090	1113	1090	1113	0.97
16	28	0.022	2.8	9.4	1.4	1	23	1123	1145	1123	1145	0.98
17	28	5.5e-05	0.0069	17.6	1.0	1	23	1152	1174	1152	1174	0.98
18	28	0.0012	0.15	13.4	0.5	2	23	1198	1220	1198	1220	0.96
19	28	0.00038	0.048	14.9	0.8	1	23	1260	1283	1260	1283	0.95
20	28	0.3	38	5.8	3.4	1	22	1290	1311	1290	1311	0.96
21	28	2.6	3.3e+02	2.9	1.8	1	23	1320	1343	1320	1343	0.87
22	28	0.024	3	9.3	1.4	1	19	1349	1367	1349	1367	0.96
23	28	0.00018	0.022	16.0	1.4	1	23	1379	1402	1379	1402	0.95
24	28	1e-05	0.0013	19.8	0.3	2	23	1422	1443	1421	1443	0.95
25	28	0.00058	0.074	14.4	4.3	1	23	1449	1471	1449	1471	0.99
26	28	8.4e-07	0.00011	23.3	3.2	1	23	1477	1499	1477	1499	0.98
27	28	8.3e-07	0.0001	23.3	2.5	1	23	1505	1527	1505	1527	0.99
28	28	0.00024	0.03	15.6	0.4	1	23	1533	1557	1533	1557	0.93

Sequence Information

Coding Sequence: ATGGAAGATAACCAGCCTCGTGAGCAGGCAGGCTTTAGATCCGGGTTCTCGACAACTGACCACTTACAAGTTCTGAACCAACTCATCGAAAAATGCTCGGAATACCAGCAAAAACTATATCTGGGATTTGTCGATTTCACGAAAGCATTTGACACCATCGAGCACACCATGATCTTCAAGTCACTTAACGAACAAGGCATACATCCAAAATACATTCACATAATTAGAAAGCTGTACAACAACAACATTGCAACAATAAGGCTCGAAAGGATCGGTCGCCCTTTCCAATTGATGAGGGGAGTTCGTCAGGGAGACCCACTTTCTCCTACTCTATTTGCAGCTGTATTGGAGGGATGTTTCAAACACTTAAACTGGAGTGAGATGGGGATCAACATTGATGGagaaaaactaaataatttaaaatttgccgaTGACATTACACTAATAGGCACATCAGACACTGAACTAAGAACAATGATTGAAGACCTACGCCGAGAATGCTCAAAAGTTGGACTACATATCAACAAAGAAAAGACGAAACTAATGACTAACGCACAACCATTCCAAATTCAACTTGAAACTGAGAACCTTGAATATGTAGACGAATTTATATACTTAGGCCAATTAATATCCTTTACTCAACGAACTGACAAAGAAATTGCAAGACGAATAACGAATAGTTGGAAACAATATTGGAATCTGAAACCGATTCTCAATTCTAATATAACGCCGGATTCAAAAAAATACTTGTTCGATGCTGCAATACTTCCAGTCATGACATACGGTGCACAAACATGGACCCTAAACGCAAGAGCGGCTAAAAAACTGCAAATAAACGCGAATAACCTTGAAATCTATTTTCATTTCAGTAAAAAACCAGCCAACATCCCAAAAACCCGAGCCAAACGATCAAGCGTCAGGACCCAAAATCGAACAAAGAACGTAAAAACCGCTTCCAGCCGTTTCGAGTGTGATTCGTGCAACAAAACATTCGCTTGGAAAAAGGATTTGTTTCGCCATGAAAAATATCACGATCCAAATAATAGAAAGTTCGGCTGCCCGCACTGTAGTCGTCGATTCATACGAAAGGACAAACTGTCATCGCATTTGCTCGTTCATTTGGCGGGTGTTCCCAAGCGTCCATTAAAGAGTGCCCAATACTTTGCACATCATTTGTTTTCTGATagacgattcaaagagatcAAATGCATGATTTGCAACTTTGAAGCAGCGTCAGACGTGCCAGAGCTTCGTCGCCACATTATCTTACACAATAACTTGGAAATGATTGAAGGTCTGGAAAAGAGCGAAGTCGTTAAAACATTCTACCCGGAGAAAAGGCTGCAAGAAGTCATTCCACTGATCGCCGCCCAAATCGCCAACAGAGAGTTGAACAAACTCTATTCGATTGTCAACTCCCATAGCTACGAGATGGGCATAAGCGATTCGGATCAAAGTGATCCGGACGCCAAAGAACCGAAATACACATGTGAAATGTGCAGCAAACAGTTTAATCGAAAACACAAGCTTATGACACACCAGGCGTACGAGCACACTTTTGATGAGTGCCCGTACAGCTGTGAGGGATGTAATCTGAAATTCACCAGCAAACCTGTGCTTGAGAGTCACTTGAAGTATCACTGTAAGAATCCAGACAAGATGTTGCAGTGCAAAAAGTGTCCAGGTCGATTCTCTTGGCCGAAGAACTTGGAGAGCCACAGATGTGGCGGCAAGAAGATTGTGCTTGACAAGGAGTGCACCACTTGTGAAGTGTGTAACAAAGTCTTCGCTTTCCCCAGGGATCTGAGAATACACAAAAAGACGCACATACCAGACGGCAAGGCTCACAAGTGTTCGGTGTGCGGTGAGAGGTTTTTGAGGGCCCAAAATCTGCGTGGCCATTTGAAAAAGCATTCTGCAAATGTCTTCGCTGCCTTAAAGCCGAAGAAATTTATGTGCACGCTGTGCAATTTGGAGTTCTTGAGCATTCCCAGCCTGAAATTCCATTTATACACGCACGCCGATGGCCAGACAGACATCAACTTTGACAATTGCGAGTTTATAACCAATTTCTATCCTGATCCAGACGTGGACAGAGGCACGATTTCAcagtacattcgagactgtttCAATCAGCAGAAGCTCTGGCAAATGTATGCAGCGGTCAACAAATTTGGCCTCGAGATGGTCTTGAGCGACTCTGACTCGGCAAATGAGAACGAAGCCAAAGAACAAGATCCCTATGTCTGCGAGCTGTGTGATGTAAAGTTCACTCGGATGCAGGACATCGTGCAGCATCAACTTGTCGAGCACGACTCAAAGAAGACTACTTTCCCGCACAAGTGTGAAAAGTGCGGCGATCAGTTTGTTTGCGCCGCCATTCTAACCCGTCACACGAAAAGTGAGTGCTCAAACTTGGACAGAGTACACGCGTGCAAGAAATGCGGCGCCAAGTTTATGTGGAAACTAAATTTGGCCGGCCACAACTGTGTACGGGACGGAGAGAACGGCGACAATGATAAAACATGCGAGACGTGTGGAAAGAAATTCGCTTGGTTGAAGGACCTGCACCGGCACAAGCGTAGCCACATACCGACTggggaaaaattcgagtgtctAATATGTGATCGTAAGTTCAATCGAAAGGACAACATGCGGGCACACATGAAAGTCCATGCGATAGACTACAAGTCGCCAAAGATGAAAGCGACCTTAAAATGGGAACAGCAGGACGAGAACTTGTGCAAGCCTCATGGTGTGAAGGAAATTCAGTGCAAGATCTGTTTGTCGAAGCACAACTCCATTCGTGACTTGGCAAGTCATTTAACGACGCACACGGATCAGGAGACACTCAAACACAGGCAAGCAGAGATCGGCGATATCACGATGATGCTGTACAACAAGCAGATGAGTCTGTCGGAGCTTTCGAAGCGAATCGGAAAAGATCTTGCGAATGGCAGTCATACGCGATTCTATTCGATCACCAACGAATCCGGCTATGAGTTGAGCCTATTCGATTCGGAAACCAGTTCGGACTTAGAAGCCGAAGGCTATGATGACAGTGATGACGATGAAGTGCCCAAGGGTTACAACTGTTTGCTGTGCAAGAAGAACTTCAATCGAAAGTTTAAGATGTACAACCACCAAAAGTTGGATCATTCTTGGGATGAGCTGCCGCTCGAGTGTACGTTTTGTGGTCTGAAGTTTGCCAGCGATGGCATCTATTCTGCCCATCTAAAGAACGAGTGTAATAATACCGAGAAGCAGTTCAAATGCAAGCAGTGCCCTATGAAGTTCACCTGGAAAGAGAATCTGAAGAACCACGAAAGGGTTATGCACGATAAGAATCCAGCAGTGGCACGGAAGTATCCTTGCAGTTTTTGTGACCGCAGTTTCCTTTGGCAGAAGGACTTGCTGAGGCACAGAAAGACGCACGGCACCCTCGACAGGACATTTGAATGCACATGGTGCTTCAGGGTGTTTCTGCGAAAGGATAATCTCAAGATTCATATGAAAGTGCACAAGAACGCCACACACCTACAACTACCCGACATCTACTATCTAGCTCGACCGAATGGTCACAAAAAGGCCGAATGTAAGCTCTGCGACGAAAAATACTCCAGCGTCCATGAACTGCTTGCTCACATGCAAAATGCACACGTGAACGAGATGGATGCAACCATTCCAAATGTCTCCAGTTACTCGATTACAAACGCACTTGGCTACGAGATGGACATCGAGGACTCTGAAACCGAAAACGAGGTAGAAAACGAAAAGTACTCTTGTGAAATTTGTGACACCCGATTCGGTCGTCGCTTCAAACTGCTGCAACACCAACAGGCTCTTCACTATTCAGACGACATACCACACAAGTGCAGCTTTTGTCCGTTTAAATGCGTCTCGAAAGATGTGCTCAGCTATCACATGCGATCCCAATGCTTGAGCTCGTCGAAACAATTCCGCTGCACCCGTTGCACAATGCGGTTTATGTGGAAAGAAAATCTAGATCACCACGAAAGCCTGATCCACGACAGTGCTCGAACGCACAACTGCGATATCTGCAAGAGGGATTTCGCGACACTTCACGACCTCAACAGCCACGACGAATGCAAGCCACCAGGTGATGTTCAATATTTCGAATGCGACATTTGTAACCGAAAGTATAACCGCAAAGATCGACTCATTCGGCACGTAAAGGATAAGCATACTGACATCAAGATCAAACAACGCGTCAAGAGCGCACCGCCGGCCGATAAAATGTTCTTGTGCGCCTTCTGTGGCAAGGAAGTATCCAGTTCCTCGAATCTGATTATCCATATGCGCCGACATACGGGTGAGAAGCCCTTCAAGTGTGAGTTTTGTAACAAGGGCTTTCCGCGGTCTTCCGATTTGAGTTGCCATAGGCGGACGCACACCGGCGAACGGCCACACAAGTGTTCGGTGTGCGAAAAGGCTTTCTCCCGTTCGTACAAACTGCAGACTCACATGCGCATTCATTCGGGCGAAAGGCCATACAAATGTACATACTGCGAGAAGACATTCACGCAATCTAATGACTTGACGCTTCATGTGCGCAGGCATACAGGCGAACGCCCGTACACATGCGAGACATGCGGCGAAAGGTTTATACAGGGAACCGCACTTCGCAATCACCGGCGAATGCGCGGACACTATGAAATGTAA
Protein Sequence: MEDNQPREQAGFRSGFSTTDHLQVLNQLIEKCSEYQQKLYLGFVDFTKAFDTIEHTMIFKSLNEQGIHPKYIHIIRKLYNNNIATIRLERIGRPFQLMRGVRQGDPLSPTLFAAVLEGCFKHLNWSEMGINIDGEKLNNLKFADDITLIGTSDTELRTMIEDLRRECSKVGLHINKEKTKLMTNAQPFQIQLETENLEYVDEFIYLGQLISFTQRTDKEIARRITNSWKQYWNLKPILNSNITPDSKKYLFDAAILPVMTYGAQTWTLNARAAKKLQINANNLEIYFHFSKKPANIPKTRAKRSSVRTQNRTKNVKTASSRFECDSCNKTFAWKKDLFRHEKYHDPNNRKFGCPHCSRRFIRKDKLSSHLLVHLAGVPKRPLKSAQYFAHHLFSDRRFKEIKCMICNFEAASDVPELRRHIILHNNLEMIEGLEKSEVVKTFYPEKRLQEVIPLIAAQIANRELNKLYSIVNSHSYEMGISDSDQSDPDAKEPKYTCEMCSKQFNRKHKLMTHQAYEHTFDECPYSCEGCNLKFTSKPVLESHLKYHCKNPDKMLQCKKCPGRFSWPKNLESHRCGGKKIVLDKECTTCEVCNKVFAFPRDLRIHKKTHIPDGKAHKCSVCGERFLRAQNLRGHLKKHSANVFAALKPKKFMCTLCNLEFLSIPSLKFHLYTHADGQTDINFDNCEFITNFYPDPDVDRGTISQYIRDCFNQQKLWQMYAAVNKFGLEMVLSDSDSANENEAKEQDPYVCELCDVKFTRMQDIVQHQLVEHDSKKTTFPHKCEKCGDQFVCAAILTRHTKSECSNLDRVHACKKCGAKFMWKLNLAGHNCVRDGENGDNDKTCETCGKKFAWLKDLHRHKRSHIPTGEKFECLICDRKFNRKDNMRAHMKVHAIDYKSPKMKATLKWEQQDENLCKPHGVKEIQCKICLSKHNSIRDLASHLTTHTDQETLKHRQAEIGDITMMLYNKQMSLSELSKRIGKDLANGSHTRFYSITNESGYELSLFDSETSSDLEAEGYDDSDDDEVPKGYNCLLCKKNFNRKFKMYNHQKLDHSWDELPLECTFCGLKFASDGIYSAHLKNECNNTEKQFKCKQCPMKFTWKENLKNHERVMHDKNPAVARKYPCSFCDRSFLWQKDLLRHRKTHGTLDRTFECTWCFRVFLRKDNLKIHMKVHKNATHLQLPDIYYLARPNGHKKAECKLCDEKYSSVHELLAHMQNAHVNEMDATIPNVSSYSITNALGYEMDIEDSETENEVENEKYSCEICDTRFGRRFKLLQHQQALHYSDDIPHKCSFCPFKCVSKDVLSYHMRSQCLSSSKQFRCTRCTMRFMWKENLDHHESLIHDSARTHNCDICKRDFATLHDLNSHDECKPPGDVQYFECDICNRKYNRKDRLIRHVKDKHTDIKIKQRVKSAPPADKMFLCAFCGKEVSSSSNLIIHMRRHTGEKPFKCEFCNKGFPRSSDLSCHRRTHTGERPHKCSVCEKAFSRSYKLQTHMRIHSGERPYKCTYCEKTFTQSNDLTLHVRRHTGERPYTCETCGERFIQGTALRNHRRMRGHYEM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00312009;
90% Identity: iTF_00311229;
80% Identity: -