Cver021701.1
Basic Information
- Insect
- Cheilosia vernalis
- Gene Symbol
- retn
- Assembly
- GCA_949126925.1
- Location
- OX421361.1:30203444-30244910[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.29 1.2e+03 0.8 0.0 41 65 78 103 72 114 0.75 2 2 6.3e-21 2.5e-17 63.8 0.0 2 79 244 319 243 320 0.93
Sequence Information
- Coding Sequence
- ATGATCGTCCAGTCCAACGACGAACATTCTGAGGACGACATAAGAGACTGCGAGTCAGTAGATGACGAGAATACCAGCCGATTAAACGCCTCGATGTCCAACGGCATGGGCATGGACTACGGGGGAATCGGCGGTGCCAGGAGTCCAGAACAACACAGCGCAGAAATTCAAATGAGTCACCATCATGCACAGTTCGCCACGAATCATCCGCTGGGAGCACTGGGCAATTTCATGAGTATGGGCGGATTGCACAGCATCCCCAAtctgcagcagcagcacaacGATGTGCTGGAAAAACTGAAAATGCAGGTCCGCGACATGAAAGTCGGCCTGATGGACCAGGAATACCCACCACACGCAAACTTTGGCTCAAATGTCATTCCAACCCCCATCAACACGGCGTTCACAATCCCGTCAACTTCTCATACCTCGTTCGGTCACTCCCCGCAGAATCTCTCACAGCCATCTCCGCAGCCGCAGCAACCCATGCTATCAACgcaccaacaacagcaacaacaacagtcgCAGTCACAAACAAGTTCCCAATCTCTGCCGAATGGTTTCTCGTTCACATCACCCCCAGCGCCAAGCACAAAAGACGTGAATCCAGCGTCCAACTCATCAACATCCAGCGAAACATCGAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAATACAAACAAGTTCGACAGCTCTACGAGATAAATGATGACCCTAAACGCAAGGAGTTTCTCGATGACTTGTTTTCCTTCATGCAGAAGCGTGGTACGCCCATAAATCGCTTGCCCATCATGGCGAAATCGGTGCTCGATCTGTACGAGCTGTACAATTTGGTTATAGCGAGAGGCGGTCTCGTCGACGTGATCAACAAGAAGCTGTGGCAGGAAATCATAAAAGGACTGCATTTGCCGTCGAGCATTACCAGCGCAGCGTTTACCTTGCGCACGCAGTaa
- Protein Sequence
- MIVQSNDEHSEDDIRDCESVDDENTSRLNASMSNGMGMDYGGIGGARSPEQHSAEIQMSHHHAQFATNHPLGALGNFMSMGGLHSIPNLQQQHNDVLEKLKMQVRDMKVGLMDQEYPPHANFGSNVIPTPINTAFTIPSTSHTSFGHSPQNLSQPSPQPQQPMLSTHQQQQQQQSQSQTSSQSLPNGFSFTSPPAPSTKDVNPASNSSTSSETSNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694378;
- 90% Identity
- iTF_01541215; iTF_01044523;
- 80% Identity
- -